Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0852 ATGATCAATTTTCCCCAGAAAATGCAGGGGAATAATCATACAGGTATGGGCTTTAAAGAATATGTAAACGCTTTGGAAGCAGAACGTCTCAAGATTCAGGTTTTTCAGCGTGAGCTTCCTCTCTGCTTAGAGCTTGTAACTCAAGCTATTGAATCATGCAGGCAACAGTTATCTGGAACGACAACGTCTGAGTATATGAATGGAGGCCAATCGGAATGTTCAGAGCAGACTTCAAGTCCAGTTTTGGAGGAATTCATGCCCATTAAAAGTTATGCTACTGCTGCTACTGATCATTCTTCAGATTTTGATGATAAAGATGAACATTCTGATGATCGTAATAATAATACTAACTCTAACGATGAGATGAAGAAGAAATTAGAGGGCCAGGCAGATTGGCTTAGATCTGCTCAGCTCTGGAATCAAACCCCGGATCCACCCATCAAAGAGGATGAACCTAAAACGACGTCGGTTGTTGAGGTGAAGAGAAATGGGGGAGCGTTTCATCCGTTTCATAGAGAAAAAGCTAGTCCTGTAAAAACTAATCAATCAGAAGTTAGTAAGCCTCAAGAAACTGCTGCTGCCAGTTCAACCGCGGGAACCACCGCCTCAGGCGGCGGCTGTCGTGGTGGTGTGACGTGCTTAAGAGCTGAGAAAGATAGCCAGAACAATAGAAAGCAGCGGCGGTGCTGGTCTCCTGAGCTGCACCGACGGTTCTTGCATGCTCTGCAACAGCTTGGAGGTTCGCATGCTGCAACGCCAAAGCAGATCAGAGAGCTAATGAAGGTGGATGGGCTTACTAACGACGAAGTCAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAGGCCAAGTTCTGGAGGACACAATAACGGCAGCCCAAGAGCACCCCAATTTGTGGTGGTGGGAGGCATATGGGTCCCACCACCCCCGGAATATACGGCAGTGACGGCAACCGCCAGATCTCCCCCGACAACTTATGCTGTGCCGCTGCCGGTTTCAATCTCACAGGACTCAGTGGCCACCCCAAGAAGGCCGTCAAATGTATCAACCGATAACTTAGAAGAAGGTGGGGGAGGAGGAGGCCTTCATTCTAACAATTCCCCAACCAGTTCTTCGTCCACACACACTAGCACAGCTTCCCCCGCGTTGTAG 1155 47.79 MINFPQKMQGNNHTGMGFKEYVNALEAERLKIQVFQRELPLCLELVTQAIESCRQQLSGTTTSEYMNGGQSECSEQTSSPVLEEFMPIKSYATAATDHSSDFDDKDEHSDDRNNNTNSNDEMKKKLEGQADWLRSAQLWNQTPDPPIKEDEPKTTSVVEVKRNGGAFHPFHREKASPVKTNQSEVSKPQETAAASSTAGTTASGGGCRGGVTCLRAEKDSQNNRKQRRCWSPELHRRFLHALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSSGGHNNGSPRAPQFVVVGGIWVPPPPEYTAVTATARSPPTTYAVPLPVSISQDSVATPRRPSNVSTDNLEEGGGGGGLHSNNSPTSSSSTHTSTASPAL 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7621202 7622966 - Conep13aG0087800.1 Cone13ag0852 451239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0852 384 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 343 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0852 384 Pfam Myb-like DNA-binding domain 227 278 IPR001005 -
Cone13ag0852 384 NCBIfam myb-like DNA-binding domain, SHAQKYF class 225 280 IPR006447 GO:0003677(InterPro)
Cone13ag0852 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 282 IPR017930 -
Cone13ag0852 384 MobiDBLite consensus disorder prediction 94 123 - -
Cone13ag0852 384 FunFam Myb family transcription factor 224 282 - -
Cone13ag0852 384 MobiDBLite consensus disorder prediction 165 208 - -
Cone13ag0852 384 SUPERFAMILY Homeodomain-like 224 283 IPR009057 -
Cone13ag0852 384 MobiDBLite consensus disorder prediction 179 203 - -
Cone13ag0852 384 MobiDBLite consensus disorder prediction 363 384 - -
Cone13ag0852 384 Gene3D - 224 282 - -
Cone13ag0852 384 MobiDBLite consensus disorder prediction 338 384 - -
Cone13ag0852 384 MobiDBLite consensus disorder prediction 98 123 - -
Cone13ag0852 384 MobiDBLite consensus disorder prediction 338 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1112 Cone-Chr12:9000945 Cone13ag0852 Cone-Chr13:7621202 7.06E-41 dispersed
Cone13ag0852 Cone-Chr13:7621202 Cone2ag0272 Cone-Chr2:1393242 2.06E-49 dispersed
Cone13ag0852 Cone-Chr13:7621202 Cone19ag0853 Cone-Chr19:6697499 7.36E-172 wgd
Cone13ag0852 Cone-Chr13:7621202 Cone6ag0464 Cone-Chr6:2290524 9.30E-98 wgd
Cone13ag0852 Cone-Chr13:7621202 Cone9ag0476 Cone-Chr9:2270650 1.20E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44638 PF11926 DUF3444 6.70E-76 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0852 - - - 0.0