Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0853 ATGGAAGCAAGCAATTCCGTAGATGAAAGCACAACAAGCGAATCCACCACCATTTCTTCGATAACGCCGTTATCTTTTCCCGTCAAGACAGCCTCTCCTCCTGGAAGCGGAGCAAGCATCGTTCTAGAGAATCTAGACTCTTCCGATTCAACCGGCGTTGAAGCAGAGTCCCGTAAACTACCATCCTCCCGTTTCAAAGGCGTCGTGCCTCAGCCAAACGGGCGTTGGGGAGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGAACATTCAACGAAGAAGACGAAGCTGCCCGGGCCTACGACATAGCCGCCCAACGGTTCCGCGGACGCGACGCTATCACAAACTTCAAACCGCTTTTCCAAACTGGCGTTGGGGATGATTGCGAGACGGCGTTCCTCAACTCTCATTCGAAAGCGGAGATCGTGGACATGTTACGGAAACACACTTACGATGAGGAGCTGGAGCAGAGTAAGAGAAACTATAACGGCGGGTTGAACCGGGATGATTTAACCCGGCAGCGAACCGGATCTGGAGAGTGGAACCCGGGTTCCAATGAACGGGAGCTGCTGTTTGAAAAGGCTGTTACGCCGAGCGACGTGGGAAAACTGAATCGGTTGGTTATTCCGAAACAGCATGCCGAAAAGCACTTTCCGTTGCACAGTGGAGGAGGAGGAGGTGGTTCTTCTTCTTCTTCTTCTTCGTCCAAAGGGCTTCTGCTCAACTTTGAGGATTTTGGAGGGAAAGTGTGGCGGTTCAGGTACTCTTACTGGAACAGTAGTCAAAGCTATGTGTTGACCAAGGGATGGAGCCGGTTCGTGAAGGAAAAGAATTTGAAAGCCGGTGACATTGTGAGCTTTATGAGAGGCAGCGGACCGGGTGGTGAGAAGCAGAACCAGCTGTACATTGACTGGAAGACGAGGAGTGTGAACCCGGTTCAGCATCCGGTTCAGATGTTTAGACTGTTTGGGGTTAATATCTTGGAGTTGCCTGGGGTTGACGGGACTGGATCGTGCGGTGGGAAGAGAGTCAGAGAGATGGAGCCCTTGGGTTTTGAGTGTAGTAAGAAGCAGAGGATTATTGGTGCTTTGTAA 1098 51.64 MEASNSVDESTTSESTTISSITPLSFPVKTASPPGSGASIVLENLDSSDSTGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAITNFKPLFQTGVGDDCETAFLNSHSKAEIVDMLRKHTYDEELEQSKRNYNGGLNRDDLTRQRTGSGEWNPGSNERELLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLHSGGGGGGSSSSSSSSKGLLLNFEDFGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFMRGSGPGGEKQNQLYIDWKTRSVNPVQHPVQMFRLFGVNILELPGVDGTGSCGGKRVREMEPLGFECSKKQRIIGAL 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7632578 7633852 - Conep13aG0087900.1 Cone13ag0853 451240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0853 365 MobiDBLite consensus disorder prediction 1 58 - -
Cone13ag0853 365 FunFam AP2 domain-containing protein RAP2.8 63 120 - -
Cone13ag0853 365 Pfam AP2 domain 63 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0853 365 CDD B3_DNA 192 288 IPR003340 GO:0003677(InterPro)
Cone13ag0853 365 Gene3D AP2/ERF domain 63 120 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0853 365 ProSiteProfiles B3 DNA-binding domain profile. 193 310 IPR003340 GO:0003677(InterPro)
Cone13ag0853 365 MobiDBLite consensus disorder prediction 1 29 - -
Cone13ag0853 365 MobiDBLite consensus disorder prediction 41 57 - -
Cone13ag0853 365 MobiDBLite consensus disorder prediction 159 186 - -
Cone13ag0853 365 Pfam B3 DNA binding domain 193 291 IPR003340 GO:0003677(InterPro)
Cone13ag0853 365 Gene3D - 187 317 IPR015300 -
Cone13ag0853 365 ProSiteProfiles AP2/ERF domain profile. 64 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0853 365 CDD AP2 63 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0853 365 MobiDBLite consensus disorder prediction 161 184 - -
Cone13ag0853 365 SUPERFAMILY DNA-binding pseudobarrel domain 190 291 IPR015300 -
Cone13ag0853 365 SMART B3_2 193 299 IPR003340 GO:0003677(InterPro)
Cone13ag0853 365 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 63 328 IPR044800 GO:0003700(InterPro)
Cone13ag0853 365 SMART rav1_2 64 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag0853 365 SUPERFAMILY DNA-binding domain 63 119 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0853 Cone-Chr13:7632578 Cone1ag0418 Cone-Chr1:3672787 9.52E-48 dispersed
Cone14ag0476 Cone-Chr14:2312898 Cone13ag0853 Cone-Chr13:7632578 4.59E-47 transposed
Cone13ag0853 Cone-Chr13:7632578 Cone19ag0854 Cone-Chr19:6703569 6.06E-233 wgd
Cone13ag0853 Cone-Chr13:7632578 Cone6ag0468 Cone-Chr6:2305115 8.12E-143 wgd
Cone13ag0853 Cone-Chr13:7632578 Cone9ag0480 Cone-Chr9:2293951 1.66E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44639 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0853 K09287 - rcu:8269518 444.891