Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0856 ATGGCTGCTGTTGCAGCAGGAGGAGTTACTGCACGAGCTCCCAACCTCCAATCTGTACAACCCAAACCCACTTTTTCCCCATTCCTCGGCAACAAGCTGATCAGAATCAAACCCATCTCCGATTCAAGAACTGCTTCCACTCGGAACCTCTTAGTCTCAGCAGTGTCACCTACTGGCGATTTGATCGACGCTGTTCATAATCTTTTCGTGGGAGTCGGAGTGGGGCTTCCTTGCACAGTTATGGAGTGCGGTGATATCATTTATAGAAGCACTCTTCCGAAATCTAATGGCTTAACGCTCACAACACCCGGTGCTGTTCTAGCTTTAGGTGCTTTATCTTATCTTTGGGCCACACCTGGAGTCGCTCCGGGTTTTTTCGACATGTTTGTTCTTGCATTTGTTGAGAGACAGTTCAGACCCACTTTCAGAAAAGATGATTTTATTTTGGGGAAGAAGTTGGGTGAAGGAGCTTTTGGGGTGGTTTATAGAGTTTCGTTGGCTAATAAATCTTCTGATAAGAAGGGAGGTGACTTGGTGTTGAAAAAGGCTACTGAATATGGTGCAGTGGAGATTTGGATGAACGAGCGTGTGCGAAGAGCTTGTGGAAGTAGCTGTGCTGATTTTATATACGGCTTTCTTGAGAGTTCTTCTTCAAAGAAAGGAGGTGAATATTGGCTCATATGGCGGTTTGAAGGGGAGGCTACTTTAGCGGATTTGATGCAAAGCAAAGAATTCCCCTACAATGTAGAGAGGATGATTCTAGGTGAGGCACTGGATATGCCCAAGGGTTTAGAGCGGGAAAATGTAATCATTCAGACGATCATGAGACAGCTCTTATTCGCATTGGACGGTCTTCATTCGACAGGAATCGTGCATAGGGATATCAAGCCACAGAATATCATTTTCTCTGAAGGATCTCGTACATTCAAAATCATTGATCTTGGAGCTGCAGCTGATTTGCGAGTAGGCATTAACTATATCCCAAAGGAGTTTCTTCTAGACCCAAGGTATGCTGCACCCGAGCAATACATCATGAGCACCCAAACTCCATCTGCTCCCTCAGCTCCTGTGGCAACTGCACTCTCTCCAGTCCTTTGGCAGCTGAATCTCCCTGATAGATTTGACATCTATAGTACCGGTCTCATCTTCTTACAAATGGCATTCCCTTCTCTTCGATCCGACGGTGGCCTTATTCAATTCAACCGTCAATTAAAACGGTGTGACTATGATCTGGTCGCATGGAGGACCAGCGTCGAGCCACGAGCTGGCCCTGAACTACGACGTGGGTTCGAGTTACTGGACGTAGATGGTGGAATTGGATGGGAGCTTCTAACTTCAATGGTTCGGTACAAGGCCCGTCAAAGAACAAGCGCAAAAGCGGCTTTGGCTCATCCTTACTTTGACAGGGAAGGACTATTGGCTCTTTCCTTTATGCAAAAATTGAGGATGCAGTACTTTAGAACAACCCAGCAGGATTATGGAGAAGCCGCTAAGTGGATTATTCGGTTAATGGTGAAATCTGGAACCGAGCAAGACGGTGGCTTCACTGAAGCCCAACTTCAAGATCTCAGAGAAATGGAGCCTGCGAAAAAGAAGAAGGCGAGCCCGCAAAGAAATGCTCTAGCTTCGGCTCTACGGCTGCAAAGGAAGATCTTGAGAACCATAAATGAGAGCATGGATGAGCTTAACCAAAGTAGGAAGAGCCTCTGGTGGAGCAGATGGATTCCAAGAGAGGAATGA 1740 46.49 MAAVAAGGVTARAPNLQSVQPKPTFSPFLGNKLIRIKPISDSRTASTRNLLVSAVSPTGDLIDAVHNLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTLTTPGAVLALGALSYLWATPGVAPGFFDMFVLAFVERQFRPTFRKDDFILGKKLGEGAFGVVYRVSLANKSSDKKGGDLVLKKATEYGAVEIWMNERVRRACGSSCADFIYGFLESSSSKKGGEYWLIWRFEGEATLADLMQSKEFPYNVERMILGEALDMPKGLERENVIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPSLRSDGGLIQFNRQLKRCDYDLVAWRTSVEPRAGPELRRGFELLDVDGGIGWELLTSMVRYKARQRTSAKAALAHPYFDREGLLALSFMQKLRMQYFRTTQQDYGEAAKWIIRLMVKSGTEQDGGFTEAQLQDLREMEPAKKKKASPQRNALASALRLQRKILRTINESMDELNQSRKSLWWSRWIPREE 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7645752 7649058 + Conep13aG0088200.1 Cone13ag0856 451243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0856 579 FunFam Serine/threonine-protein kinase STN7, chloroplastic 258 472 - -
Cone13ag0856 579 SUPERFAMILY Protein kinase-like (PK-like) 133 469 IPR011009 -
Cone13ag0856 579 Pfam Protein kinase domain 149 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0856 579 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 49 576 - -
Cone13ag0856 579 Gene3D Transferase(Phosphotransferase) domain 1 253 471 - -
Cone13ag0856 579 ProSitePatterns Protein kinases ATP-binding region signature. 153 181 IPR017441 GO:0005524(InterPro)
Cone13ag0856 579 ProSiteProfiles Protein kinase domain profile. 147 467 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0856 579 SMART serkin_6 147 467 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0856 579 Gene3D Phosphorylase Kinase; domain 1 133 229 - -
Cone13ag0856 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0856 579 CDD STKc_SNT7_plant 151 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0856 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0856 Cone-Chr13:7645752 Cone14ag0070 Cone-Chr14:382790 6.12E-94 dispersed
Cone13ag0856 Cone-Chr13:7645752 Cone19ag0856 Cone-Chr19:6713578 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82033 PF03141 Methyltransf_29 1.00E-68 CL0063 Cone PK