Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0864 ATGTTCACGCCGCAGAGGAAAGAGTGGCAAGCGGCATCGCTCACGCCGAGGAGCGAAGCAAGAGCGGTGGGTTCTGTCTCTCGGAACATGGAGAAAGGTAAGGCAGTTGCGATTCTTGATGATCCGCCACCGCCATTAGGTTTGCTGAATGAAAATTTGTTGGGGAATTCTAACGTGGGGATGGGCAATGAGGATATGGAGGTTTGGAGGAGGTTTAAGGAGGCGGGGTTTTTGGACGATGCTGCTATGGAGCGCAGAGACAGAGAAGCGCTCGCAGAGAAGGCTTCGAAGCTTCAAAATGAGCTCTTGGATTACCAGTTTAACATGGGGCTTCTTCTAATTGAGAAGAAGGAATGGGCTTCAAAGTATGAAGAACTACAACAGGAGCTGGCCGAACATGAGGAGATTCTCAAGCGCGAACATTCTGCCCATCTGATTGCAGTATCTGAAGTTGAAAGAAGAGAGGAAATTTTGAGGAAAGCCCTAGCTTATGAGAAGCAGTGTGTTGCTGATCTTACAAAGTCCTTGCGAGGAGCGAGTGACGAGCATGGGCAGATTAAACTTGAATCTGAGAAGAAATTTGCTGATGCTAATGCTTCGATGGCTGGTCTCGAGGAGAAATCACTGGAGCTTGAAAAGAAGTTGCATGCAGCTGATGCCCGGCTTGCTGGGGTGAACAGGAAGAGTTCAGAATTAGAAATGAAACTGCATGAGGTTGAGGCCCACGAAAGTGTACTCCGGAGGGAGCGTTTGTCCCTAAACACAGAGCAAGAAGTATATGAGCAGACTTCTGGTAAACAAAAAGAGGACTTGCATCAATGGGAGAAGAGGTTGCAGGAACGTGAAGAGAGTCTAGCGAAGGGTCACAGAATCCTCAATGAGAGAGAGCAGAAGGCAAATGAATACGACAGGACCTTTAAGGAGAAAGAACAGGGGCTGGAGGAGATACAGACAAAGATCGATCAGTCAAGTTTATCACATGAAAAGAAGGAAGATGACATAAACCAAAGACTGGAAGAGTTAGAAGCTAAAGAGACAGAAGCTGCTTCTGTGAGAAGCTCGTTAGAGTCAAAACAAAAGGAATTGCTAGCGCTAGAAGAAAAACTCTTTGCGAGAGAAAAGGTAGAGATTCCACAGCTCATCGAGGAGAGAAGGGTCATTCTGGAGAAAGAGAAGCATGGTTTTGAGTTGCAACTGAAAGAAAAGAGGGTATCTCTTGACAAGGAACTTAATGGCAAGGTTGCTGCATTGGAGCAAAAGGAAACTCAAATCAGGCATGAGGAAGAAAAATTGTTGAAGGTAGAGAAGTCACTGGAAAACAAGTCAAATAGACTAAAGGAGAAGGAAAAGGAACTTGAAGTGAAATTGAAATTGTTAAAGGAAAATGAGAAGGCTTTGAAAGCTGAGGAGAAAAGTGTTAAGGGGGGAAGACAGAAAATTCTTGCTGATAGAGAGAGTTTGCAGTCCCTTTTGGACGAGATTGAGAACATCAGGGCTGAAAACACTCAACAGGAGCTTCGGATTCGTGAAGAGAGCGAGAAATTGAGTGTAACTAAAGAAGAGAGGTCAGAGTACATTCGTCTGCAATCAGAATTGAAACACGAAATAGAGAATTACAGACTTCAGAATGAGTTGCTTTTTAAGGAAGGTGGTGATTTAAAGCAGGAAAGGGATACATTTGAGAAAGAATGGGAACTCTTGGATGAGAAAAGAACTGAAGTTAGTAAGATACTAAAGGAACTTGTTGAAGAGAGAGAAAAATTAGAGAAATCTCAATACTCTGAAGATGAAAGGTTGAAAGAAGAGAAACATGCATTGCAGGTCAAGATGCAGAGGGAGTTGGATGCTCTCAAACTTCAGAAAGAATCATTTGAAGCAAACATGAAGCACAAGCAGCTTGAATTGTCCAGAAAAGTTGAAAATGAGCGAAATATAATACTCCAAGATTTTGAAATGCAGAGACGGGATCTTGAGACTCGTTTGAGAAGTAGGCAGGATGAAATGGAGAACATTTTCAAAGAAAGAGAGGCATCATTTGTTGAGGAGCGTGAAAGAGAACAAAAGAATATCAAGTATTTGAATGAAATTGTTCAGAGAGAGAGGGAAGAATTAGCTTCTGAAAAACATCAAGTGGAAAAGGAAAAGGAGGCGGTAGCTTTGAACAGGAAGCAGCTGGAATTAGACCAGCTTGAAATCCGGAATGATATTGATAACCTCGATATGCTTAGCAAGAAACTTAAAGTTCAGCGCCAACAGCTTATTCAGGACAGAGGTTGCTTCTTGGCTTTTGTTGAGAAGTGCAAGAGTTGCACAAATTGTGGTGAAAGCATGGCCGAATTTGTATTCTCTAACCTTCAATTACCCGATGTAGAAAATCAGAAGGGCATTTACCTGCCAACACTGGATGATGAATCCTTGAAGAGTTTTCGATTTTCTTCTCCTAAGTTGGGCATTGGTGGACCAACTTCTTTGCTTCGCAAATGCACCTCCCTTTTTAAGCTGTCTCCTAGTAAGAAAACTGAAAATGTTGTCTCTCCAGCTTCAATGGAATTGCCAGCTCCACAGTTAAAGGAAGACATACCAGGAGAGGGACCTACTGTACCACAACCATCCTTTGGAGTTGTGAATCAATCTTCTGATGCTCAAAGATTCTCCTCTGACAACAAATTTATACAAGCAGGAGATGGGTGA 2691 42.85 MFTPQRKEWQAASLTPRSEARAVGSVSRNMEKGKAVAILDDPPPPLGLLNENLLGNSNVGMGNEDMEVWRRFKEAGFLDDAAMERRDREALAEKASKLQNELLDYQFNMGLLLIEKKEWASKYEELQQELAEHEEILKREHSAHLIAVSEVERREEILRKALAYEKQCVADLTKSLRGASDEHGQIKLESEKKFADANASMAGLEEKSLELEKKLHAADARLAGVNRKSSELEMKLHEVEAHESVLRRERLSLNTEQEVYEQTSGKQKEDLHQWEKRLQEREESLAKGHRILNEREQKANEYDRTFKEKEQGLEEIQTKIDQSSLSHEKKEDDINQRLEELEAKETEAASVRSSLESKQKELLALEEKLFAREKVEIPQLIEERRVILEKEKHGFELQLKEKRVSLDKELNGKVAALEQKETQIRHEEEKLLKVEKSLENKSNRLKEKEKELEVKLKLLKENEKALKAEEKSVKGGRQKILADRESLQSLLDEIENIRAENTQQELRIREESEKLSVTKEERSEYIRLQSELKHEIENYRLQNELLFKEGGDLKQERDTFEKEWELLDEKRTEVSKILKELVEEREKLEKSQYSEDERLKEEKHALQVKMQRELDALKLQKESFEANMKHKQLELSRKVENERNIILQDFEMQRRDLETRLRSRQDEMENIFKEREASFVEEREREQKNIKYLNEIVQREREELASEKHQVEKEKEAVALNRKQLELDQLEIRNDIDNLDMLSKKLKVQRQQLIQDRGCFLAFVEKCKSCTNCGESMAEFVFSNLQLPDVENQKGIYLPTLDDESLKSFRFSSPKLGIGGPTSLLRKCTSLFKLSPSKKTENVVSPASMELPAPQLKEDIPGEGPTVPQPSFGVVNQSSDAQRFSSDNKFIQAGDG 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7687729 7693382 + Conep13aG0089100.1 Cone13ag0864 451251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0864 896 Coils Coil 194 221 - -
Cone13ag0864 896 Coils Coil 567 591 - -
Cone13ag0864 896 MobiDBLite consensus disorder prediction 1 26 - -
Cone13ag0864 896 Coils Coil 529 549 - -
Cone13ag0864 896 Coils Coil 683 733 - -
Cone13ag0864 896 MobiDBLite consensus disorder prediction 313 335 - -
Cone13ag0864 896 Coils Coil 417 469 - -
Cone13ag0864 896 Coils Coil 647 674 - -
Cone13ag0864 896 PANTHER PROTEIN CROWDED NUCLEI 4 1 889 IPR040418 GO:0005634(InterPro)|GO:0006997(InterPro)
Cone13ag0864 896 Coils Coil 607 634 - -
Cone13ag0864 896 Coils Coil 324 368 - -
Cone13ag0864 896 MobiDBLite consensus disorder prediction 870 889 - -
Cone13ag0864 896 Coils Coil 477 514 - -
Cone13ag0864 896 Coils Coil 81 143 - -
Cone13ag0864 896 MobiDBLite consensus disorder prediction 843 896 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0864 K27866 - - vvi:100242259 845.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0864 Cone-Chr13:7687729 Cone2ag0405 Cone-Chr2:2131786 4.64E-86 dispersed
Cone13ag0864 Cone-Chr13:7687729 Cone19ag0864 Cone-Chr19:6765059 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39