Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0868 ATGATGCCTCCTCCAGATAATCATCAACAACAAACTATTCATAATAAACCCAGCATTGATAGTAATATGATAGTTCCGAACCGGCCTGAGGTTCATACTGAGCTGTCGAGTTCAACCACAACCGACAACTTCAAGTACTCTTCCTTAGAACTAGAGAAGGATCGCCATCAACCTTCAAGCTCTACAAGGACAACTTTATCCATTCTCCAGCAATCCTTACGCCCTGTTACTTTGAAGTTTGAAGATGTCGCATATAGCATCCCCTTGCAAAATACTAAACCTACTTGTTTTGGACCAAATGACCCAAAGCCAACTCGCACCATCCTCAACGGCGTAACCGGAATGGTTGAACCTGGTGAGCTTCTGGCAATGTTGGGTCCGTCTGGAAGCGGCAAAACCACTCTCCTTACTGCACTTGCTGGCCGCTTACCAGGGAAAATCTCCGGCACAATAACATACAACGGAAAACCCTTCTCTTCATCCATGAAACGGAAAACAGGCTTTGTTTCACAAGATGACGTATGCTATCCTCACCTCACTGTACTTGAAACACTCACTTACTCTGCCATGTTAAAGTTGCCAAAACAGCTCACCAAACAGGAAAAAATCCAACAAGCTGAGGCGGTTATTACGGAACTCGGGTTAAAGAGATGCCGGAGCAGTTTGGTTGGTGGGACCATCTTGCTCAGGGGCATATCGGGCGGGGAGCGTAAACGGGTCAGTATAGGGCAAGAGATGGTTGTGAACCCGAGCGTATTGTTGCTGGATGAGCCAACTTCTGGGCTGGACTCGACCGCGGCCCAGCGTATTGTTGCAACACTGAAAGGGCTGGCCCGTAGTGGTCGGACCGTGGTCACCACCATTCATCAGCCGTCGAGCAGGTTGTACTTGATGTTTGATAAGGTAGTGGTTCTGTCCGAGGGATGTCCGATTTATAGTGGGCCTGCTGGCCGGGTCATGGAGTATTTTGGATCCGTTGGATTTGTGCCCGGGTTCAATTTCATCAATCCTGCTGATTTTCTCCTTGATCTTGCTAATGGTGTAGCAGTTGATACAAAACAGGATGACCAAGTAGAGTATCACGACGATCAAAGCTCGAGCAAACAGTTCCTCATATCATCCTACAAGAGGAGCTTATACCCAACATTGAAGGCTGAGATTCATAGAAGTGACAAAGATGCAATAATTCATGGTTCTACCACTCACACATCATCTGAACATTATCAGAATCAGTGGACCACAAGCTGGTGGGAAGAATTTAAGGTGTTGTTGACAAGAGGTTTAAGAGAAAGGAGGCATGAATCTTATTCTGCTTTAAAGATTTTTCAAGTCATGTCGGTTTCTATTCTGTCCGGCCTACTCTGGTGGCATTCCGACATTTCACACATCCAAGATCAGGTCGGTCTTCTGTTCTTCTTTTCTATCTTCTGGGGATTCTACCCTCTCTTCAGCGCCACATTCGCATTCCCACAAGAACAACCAATGCTAATAAAAGAACAACGTTACTCCGCCATGTACCGCCTCTCCTCTTACTTTTTCGCTCGAATGGTTGGAGATTTGCCTATGGAACTTGTCCTCCCAACAATTTTTGTAACTCTATCTTATTGGATGGGTGGTCTCAAGCCTTCCCTATCAACATTCATCCTAACCCTTTTGATCATCCTCTTCAATGTGCTTATCTCTCAAGGACTAGGGCTAGCTCTAGGGGCAGCACTAATGGATGTTAAGAGGGCAACGACCCTAGCTTCCGTGATAATGCTCGTGTTTCTACTTGCTGGTGGCTACTACATTCAACACGTCCCTTCATTTATTGCGTGGTTGAAGTACGTCTCTTTCAGTCATTTCTGTTATAAGCTTCTTGTGGGAGTTCAATATGAAGTCGATGAGGTTTATGAATGTGAGTTAGGGTTAGGGATGCGTTGTCGGGTTATGGATGTTCCAATTATTAAGTATCTCGGATTAGAGAAAAAATGGCGGGATGTAGCTGTTTTGACCGTTATGTTAGTTGGATATCGGTTTTTGGCTTATGTCGCATTGAGGATGGCGTTACGTCGTCGATGA 2061 45.51 MMPPPDNHQQQTIHNKPSIDSNMIVPNRPEVHTELSSSTTTDNFKYSSLELEKDRHQPSSSTRTTLSILQQSLRPVTLKFEDVAYSIPLQNTKPTCFGPNDPKPTRTILNGVTGMVEPGELLAMLGPSGSGKTTLLTALAGRLPGKISGTITYNGKPFSSSMKRKTGFVSQDDVCYPHLTVLETLTYSAMLKLPKQLTKQEKIQQAEAVITELGLKRCRSSLVGGTILLRGISGGERKRVSIGQEMVVNPSVLLLDEPTSGLDSTAAQRIVATLKGLARSGRTVVTTIHQPSSRLYLMFDKVVVLSEGCPIYSGPAGRVMEYFGSVGFVPGFNFINPADFLLDLANGVAVDTKQDDQVEYHDDQSSSKQFLISSYKRSLYPTLKAEIHRSDKDAIIHGSTTHTSSEHYQNQWTTSWWEEFKVLLTRGLRERRHESYSALKIFQVMSVSILSGLLWWHSDISHIQDQVGLLFFFSIFWGFYPLFSATFAFPQEQPMLIKEQRYSAMYRLSSYFFARMVGDLPMELVLPTIFVTLSYWMGGLKPSLSTFILTLLIILFNVLISQGLGLALGAALMDVKRATTLASVIMLVFLLAGGYYIQHVPSFIAWLKYVSFSHFCYKLLVGVQYEVDEVYECELGLGMRCRVMDVPIIKYLGLEKKWRDVAVLTVMLVGYRFLAYVALRMALRRR 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7728841 7732180 + Conep13aG0089500.1 Cone13ag0868 451255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0868 686 FunFam ABC transporter G family member 22 97 326 - -
Cone13ag0868 686 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 78 332 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone13ag0868 686 ProSitePatterns ABC transporters family signature. 232 246 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone13ag0868 686 SMART AAA_5 118 309 IPR003593 GO:0016887(InterPro)
Cone13ag0868 686 Gene3D - 96 326 IPR027417 -
Cone13ag0868 686 Pfam ABC-2 type transporter 289 392 IPR043926 GO:0140359(InterPro)
Cone13ag0868 686 MobiDBLite consensus disorder prediction 1 42 - -
Cone13ag0868 686 Pfam ABC-2 type transporter 419 625 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cone13ag0868 686 Pfam ABC transporter 109 260 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone13ag0868 686 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 60 676 IPR050352 GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone13ag0868 686 MobiDBLite consensus disorder prediction 1 22 - -
Cone13ag0868 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 327 IPR027417 -
Cone13ag0868 686 CDD ABCG_EPDR 75 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0868 K05681 - - rcu:8269490 942.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0868 Cone-Chr13:7728841 Cone6ag0307 Cone-Chr6:1417423 2.14E-265 dispersed
Cone13ag0868 Cone-Chr13:7728841 Cone6ag0480 Cone-Chr6:2378456 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79