Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0870 ATGCACAACGCTTATGTCAGCTCAACTCTGTACTCCTTTAGAACAAAAGGGTCTCTTTCATTTTCCTCGACCGATTACTCCTGCTTGTTGAACGAAAGATTTGGGAAAAACCCATTTCAAATTGCATCATTATCATCTTCAGGTAGTTGTTGTACTTGTTGTTCTTCTTGTGCTGAATTTTCAATCCATAGAAGGCTGCCCATCAATTCTAGTTTTCTCTATGGGTTGAGGCAATCCACCTTGCTACATTGTTCACCTTATAGAAGGTTTGTTTTAGTGGGCCCTGACCGATTCTTTTACCGGTTACCAGTTTACGCTGGGCTTGATTCGGGTTGTTATGAGACTCCTTACTATGTTAGGGGGAGGAAGGAGATATGTGATAGAAGCGGGAAAAGGAGAGATAGAAGATGTTCTTGTATGATTTCAGAGGGAAAGAATGACATTCATAGGTTAAGTGGTTTTAATGATGATGGGGATATTTTTGAGGAAGTTCTGTGCTTATTGAGTGAGGAGGTGGGAGAGGAATGTTTTAAGGGTAGAGAGAGAAGGAGTTCATTTAAGAAATCCGGATTGGAGAAAAAGGGAAGTTTAATTTCATCGAAAAGAGTAGAATTGGAGAAACGAGCAACTGATAATGGTATAGAGAGGAAAATTAGTTCATACAAAAAGAGAAGGGAAAATAAGAGGTTAGGGATTTCAGGGAGTAAATTGGACCATAAAGTTGAATCGGTCAAGATTGAGGCAGGGGAAGCGTATAGACAAAATGAAGGGAAAGAAGTTCATTTGAAAGGTGAGAATCTTAGGAGAAGAAAAGAAGGTTCTAGTTGTTCATCATATTACTCATTTTCACCATCTGAGGATAATTCAGGGAGTGATAATGAAATCTATGAAAAGCAGGGGGGTAAATTCATTGAAGAATCCTCTGGTGATTATGGGAAAGGATTGTATATGAGTGAAGAAAGTAGAGTGAATGAAAAAGTGGTACTAGAGCATGAGAGATATGGAAATGATAAGAAGGTGAATCAAGATGGGAATTTTTTTGGGGAGAAGATGCGTATTGGTGAAGGGTCAATGACCAATCAAAGTGGTTATGACAAGGCTTCTTCTTCTTCTTTGAGTTCTCGCAATAAGTTCAGTTACAAGGAATCGGACGAGGAAAGAAGGAAGCAGTCTGTCTTGTCTGAAACCGAAGGAAAATACCAGAACATTACAGAAATACCACAAAAACCGAAGAAGCTTGTTAGCGAAGTATCCATGAGCAATCAAAGTGGTTATCAGAAGGCTTCTTCTTCTTCTTATTCAAGTTCCCACAAGAAGTTCAGTTACAAGGAATCGGACGAGGAAAGAGGTAAGCATGTCTTGTCTGAAAATGAAGGAAAATACCAAAAAATTACGGAAATACCGGAAGTTCATGACACTGCTGTTGGGAAAACTTCTCAGTCTGAAAATAGGTATATGGGTGGGGAAGTAAATGTTGAGATTGAAAGAATCAATGATTCTACAGTGAACAGAGAAGAAAGGAAGAATTATTCGACAGAAGAAATATTAGTAATCAGAGACGGTAATACTGAAAATCCTCGAGTAAAGAACCATGAGCCAAAATTGAACATGGTTTCTCCTTCAATATCAGAAGCAAAAGATCATAGTTCTACAACTGATATAAGAGTTTCTCAGAGAATTCAATCCCAAAAAGGTTCCCAAGGTATTTCACTAATTCATACTGGCTACAAAGAGGTGGCTACAAATACTCAATCTACCTTTGAAACGAAAATTACGAACGAAAAGAGTACTAATACGATCTTAGTGGAAAAGCCTGTTATGGAAACAAGAAAACCGTCACAAAGACCTAATGAAGAAGAATCAAGCAGCCAAGCATCTTCTCGATTGATTTCCCAGGCTAGAGTTCAGGAAATTGATGTGGAAGAAGAAGATGATATAATATCACAGGCAATGTTAATCCCTCCCCCATCTCAATTCGTAGCTAGGCATCCTACCCATGTTGGGATAACTGAGTTGACCGGTGGAATAGAAACTCAAGAAGCTTCTGGAAGAATGTCGGAAAGCAGTGGGAGTGGTGAAAAATATTGGGAGCCAGAGGAGGATGTTATGGGTTCGGTTAATCGTTTGGAGAATTCATCTTCGCGGGTTGTAGGGGAGTTTATTGAGCAGGCGAGGATTAATGAAGGCTCGACTTCTGAAATCCGGAAGGAAGAGGAGGAAGTAGCAAAGGGCCCCTCTGATGATTTATGGCATGTGACGATGCCGCCGCCTGTTCAGCAAATAAACCAATTGGAGGGAGCGGAGGGAAGTGAGAAAACAGAGAATGTTGTAGTGAAGAGAAATGGAAGGTCTTTATGGAATGTTATTTCTGGTATGGTTCGACTCAGGTGGGGTTCAAATACCGAAACTGCCCCTAGCTCTGATGTGAAATCTGGTGGGAAAGTTTCATCGAATGAGTCTTTAAGTAGCGACACGTGGTTTTCTGGTCGCGAGCATGAGGAGATTGATCATGAGAATGGGAGAAAAAAGGGGAGAGCTTTGACTGAAGAATCAGCATCTTCTAATAGGCTGGAAAGTGGGAGGAATGCTGCTCAAATCCCAGTGGTATCTGATGAAACAAGATCAACGAATAAAAGAGCATTTCATAAAGGCGATACCTCATCTTCTCAACAGGAAAAGACAGGTTTTAATGGAGATGGAAAGAGAATTCAAGTTACTTCTTCTGGTTCGGAACTAGCAAAATCATCACTGCGATTACGTGCTCAAGAATTAAGATCTCCCACTATTGAAGGAATTTCAAATACTGGCATTCAAAAAGTTTCTTCTGGTTCGGAACTAGTGCAGCCTTCATTGCCAACGTATGCTCAAGAATTGAGAAGATCTCCCACCTTTGAAGGACGGTCAAAAACTAGTAGAACTAATGTTAGCAGTTCAACAGAGAGGTGGCCAGAATTAGTTGCAAGTCACGAGGCTAAGGAAGGGGAATTGAAACAGAGGAAGCTTCAAAGAACAAAACAAGTGGAACGGGACAGGTTTGAGGAATGGGAAGAAGCATTTACTATTGAAACCGACCAACGGAAAATTGATGAAATGTTTATGAGGGAAGCACTTGAAGAATCTAAGAAGGCTGCTGATGCTTGGGAGGTCCCGGTTGGGGCTGTTTTGGTCCAACATGGAAAGATTATTGCTCGTGGATTCAACCTTGTTGAAGAGTTACGGGATTCAACCGCCCATGCTGAACTTATATGTATTCGAGAGGCTTCGAAGCAGCTTAGGACATGGAGGCTTGCAGAAACTACTCTTTACGTGACACTAGAACCATGTCCGATGTGTGCTGGAGCAATATATCAAGCAAGGATTGACACCGTTGTATGGGGAGCACCCAATAAGCTTCTCGGAGCAGATGGAAGCTGGATTAAACTTTTTCCGGACGGGGGAGAAGCAAGTGGGTCAGAACAGAGTGATAAATCGGCTGCTCCTGTGCATCCATTTCACCCAAAAATAAAGGTGAGGCGAGGAGTACTGGCGGCAGAGTGTTCGGATGCAATGCAGCAATTCTTCCAGCTAAGAAGGAAGAAGGTTAAGAAAGAGAAGGGAGATCCTTCGTCTCCACCTACTCCTCCAGACCCAAACTCATTTATTCGCGGTAGATATCATCCGATCAAGTTCTTCACCAAGATGCATAATATTTTTCACATTATCTTCTGCTTGTAA 3714 41.33 MHNAYVSSTLYSFRTKGSLSFSSTDYSCLLNERFGKNPFQIASLSSSGSCCTCCSSCAEFSIHRRLPINSSFLYGLRQSTLLHCSPYRRFVLVGPDRFFYRLPVYAGLDSGCYETPYYVRGRKEICDRSGKRRDRRCSCMISEGKNDIHRLSGFNDDGDIFEEVLCLLSEEVGEECFKGRERRSSFKKSGLEKKGSLISSKRVELEKRATDNGIERKISSYKKRRENKRLGISGSKLDHKVESVKIEAGEAYRQNEGKEVHLKGENLRRRKEGSSCSSYYSFSPSEDNSGSDNEIYEKQGGKFIEESSGDYGKGLYMSEESRVNEKVVLEHERYGNDKKVNQDGNFFGEKMRIGEGSMTNQSGYDKASSSSLSSRNKFSYKESDEERRKQSVLSETEGKYQNITEIPQKPKKLVSEVSMSNQSGYQKASSSSYSSSHKKFSYKESDEERGKHVLSENEGKYQKITEIPEVHDTAVGKTSQSENRYMGGEVNVEIERINDSTVNREERKNYSTEEILVIRDGNTENPRVKNHEPKLNMVSPSISEAKDHSSTTDIRVSQRIQSQKGSQGISLIHTGYKEVATNTQSTFETKITNEKSTNTILVEKPVMETRKPSQRPNEEESSSQASSRLISQARVQEIDVEEEDDIISQAMLIPPPSQFVARHPTHVGITELTGGIETQEASGRMSESSGSGEKYWEPEEDVMGSVNRLENSSSRVVGEFIEQARINEGSTSEIRKEEEEVAKGPSDDLWHVTMPPPVQQINQLEGAEGSEKTENVVVKRNGRSLWNVISGMVRLRWGSNTETAPSSDVKSGGKVSSNESLSSDTWFSGREHEEIDHENGRKKGRALTEESASSNRLESGRNAAQIPVVSDETRSTNKRAFHKGDTSSSQQEKTGFNGDGKRIQVTSSGSELAKSSLRLRAQELRSPTIEGISNTGIQKVSSGSELVQPSLPTYAQELRRSPTFEGRSKTSRTNVSSSTERWPELVASHEAKEGELKQRKLQRTKQVERDRFEEWEEAFTIETDQRKIDEMFMREALEESKKAADAWEVPVGAVLVQHGKIIARGFNLVEELRDSTAHAELICIREASKQLRTWRLAETTLYVTLEPCPMCAGAIYQARIDTVVWGAPNKLLGADGSWIKLFPDGGEASGSEQSDKSAAPVHPFHPKIKVRRGVLAAECSDAMQQFFQLRRKKVKKEKGDPSSPPTPPDPNSFIRGRYHPIKFFTKMHNIFHIIFCL 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7754225 7758692 - Conep13aG0089700.1 Cone13ag0870 451257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 826 849 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 882 914 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 273 290 - -
Cone13ag0870 1237 Pfam MafB19-like deaminase 1030 1140 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Cone13ag0870 1237 CDD nucleoside_deaminase 1033 1139 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 729 746 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 355 377 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 729 751 - -
Cone13ag0870 1237 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1007 1194 - GO:0009507(PANTHER)
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 414 438 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 799 825 - -
Cone13ag0870 1237 Gene3D Cytidine Deaminase, domain 2 1017 1203 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 799 914 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 967 982 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 961 982 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 604 631 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 439 467 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 850 874 - -
Cone13ag0870 1237 SUPERFAMILY Cytidine deaminase-like 1021 1195 IPR016193 GO:0003824(InterPro)
Cone13ag0870 1237 Hamap tRNA-specific adenosine deaminase [tadA]. 1033 1191 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 1193 1213 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 273 311 - -
Cone13ag0870 1237 FunFam tRNA-specific adenosine deaminase 1022 1202 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 334 480 - -
Cone13ag0870 1237 MobiDBLite consensus disorder prediction 378 394 - -
Cone13ag0870 1237 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1027 1149 IPR002125 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0870 K11991 - - csv:101215576 731.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1281 Cone-Chr18:8973599 Cone13ag0870 Cone-Chr13:7754225 8.65E-20 transposed
Cone13ag0870 Cone-Chr13:7754225 Cone19ag0871 Cone-Chr19:6823798 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32