Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0873 ATGACAATTATATCACCATCACCAAATTCACCCTCCTCCCAACCACCACCACCACCACCACAATCTTCCACGACCCCGCCTCCATCTTCTTCCGGCAGTGGGCCTCCACAACCATTGGCTCCTTCCGTCTCACCTTCTCCTCCTCCACCACTATCCATTACACCAGCACCATCGACATCTAATCCTCCACCACCACAATTATCAAAGCCACCCTCAACTTCATCACCGCCACCAACACCATTATCAGACCCTCCTCAAAATTCTCCTCAACCACCCGAAAGTTCTCCTGCCCTGACAGAATCAAAATCACCACCACCACCTGGTCCACCCCCATCATCAGACAATCCTCCTAGAAATTCATCCCCACCACCACCTGATAAACCTGCCTCTTCGCCGAACCCTCCGCGGATTTCACCGGCCTCACCACCAGCCATCGTTTCATTGTCCTCGCCTCCTCCACCTTCACGTGTTTCTCTTTCTCCACCTTCTAATCCCTCACCATCTGACAAAGGGACTAGTAAAAGCCCCACCCCTAATGCTACTGAAATCTCACCCTCCACATCTAATAATGGAGGTCCTGATAAGGGAGTAATACTAGCTGGTAGTGTAGTGGCCGGAATCATAGTCCTTGCTCTTTTCGGTTTGGCCGTCTGGTGTCTCAGGAGACAGAAGACAAAGGTTTCACGATTTGGCGATCATGCCACGTCATCATCCCCCCTCTCCCCCTTGCCTACACCAGATTCATTCCATGTAAAGGTGCAATCCTCAGTTCCCCTTATCCAAAAAGGCTCTAACAGCGATTTTCTAAATCCTCCACCCGAGCCGGCTAAAGTAGGCAATTCAAGGTCACTGTTTACATATGAAGAACTAGTCAAGGCAACAAATGGGTTTTCGGCTCATAATCTTTTAGGTGAGGGAGGATTTGGATCTGTTTACAAAGGATATCTACCAGATGGGAGAGAGGTAGCTGTAAAGGAACTAAAAATTGGAGGTGGTCAAGGTGAAAGAGAATTTAAGGCAGAAGTTGAAATTATTGGTCGAATTCATCATCGACATTTGGTTTCATTAATCAGCTACTGCATATCAGAGAATCAAAGGCTTCTTGTCTATGACTATGTCCCGAACAATACCCTTTATTACCATCTTCATAGTAAAGTGGAAGGCAGGGCAGCTTTGAACTGGGCAGCACGTTTTAAAATTGCAGCAGGGGCAGCTCGAGGAATAGCATATCTTCATGAAGACTGCCATCCTCGGATCATCCACAGGGATATCAAGTCTTCAAACATTCTTCTGGATCACTATTTCGAAGCTTGTGTTTCTGACTTTGGCCTTGCTAAATTAGCTCTTGACGCTGATACACATGTAACTACTCGTGTCATGGGAACCTTTGGATATGTGGCTCCTGAATATGCATCAAGTGGGAAATTAACTGAGAAATCAGATGTGTACTCTTTTGGAGTTGTTCTTTTAGAAATAATTACTGGAAGAAGGCCCGTGGATACTTCCCAACCTCTAGGAGATGAGAGCCTAGTTCAATGGGCTCGGCCGTTGCTAAGCCATGCACTGGACAGTGCAGAGTTCAGAAAACTGGTGGACCCTGCACTCGGAAATAACTATATCGAGGGCGAGATGCTTAGAGTTGTTGAAATTGCTGCAGCTTGTGTGAGACATTCAGCTGCCAAGAGGCCGAGAATGGGGCAGGTTGTTAGAGCTTTTGAGAGTTTAGGTACTTGTGACTTAAGCAATGGAATGAAAGTCGGAGAAAGCGAGGGGTTTGACCCGGCTCAACGCTCCGAGGAATTACGGTTTTTCCGGAGGATGGCTTTCGGTGGCCAAGATTTTAGTACAGAATTCTTTAACCAAAGTAACTTGTAA 1875 46.83 MTIISPSPNSPSSQPPPPPPQSSTTPPPSSSGSGPPQPLAPSVSPSPPPPLSITPAPSTSNPPPPQLSKPPSTSSPPPTPLSDPPQNSPQPPESSPALTESKSPPPPGPPPSSDNPPRNSSPPPPDKPASSPNPPRISPASPPAIVSLSSPPPPSRVSLSPPSNPSPSDKGTSKSPTPNATEISPSTSNNGGPDKGVILAGSVVAGIIVLALFGLAVWCLRRQKTKVSRFGDHATSSSPLSPLPTPDSFHVKVQSSVPLIQKGSNSDFLNPPPEPAKVGNSRSLFTYEELVKATNGFSAHNLLGEGGFGSVYKGYLPDGREVAVKELKIGGGQGEREFKAEVEIIGRIHHRHLVSLISYCISENQRLLVYDYVPNNTLYYHLHSKVEGRAALNWAARFKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDHYFEACVSDFGLAKLALDADTHVTTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLEIITGRRPVDTSQPLGDESLVQWARPLLSHALDSAEFRKLVDPALGNNYIEGEMLRVVEIAAACVRHSAAKRPRMGQVVRAFESLGTCDLSNGMKVGESEGFDPAQRSEELRFFRRMAFGGQDFSTEFFNQSNL 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7771553 7774995 - Conep13aG0090000.1 Cone13ag0873 451260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0873 624 Gene3D Transferase(Phosphotransferase) domain 1 373 581 - -
Cone13ag0873 624 MobiDBLite consensus disorder prediction 162 192 - -
Cone13ag0873 624 ProSiteProfiles Protein kinase domain profile. 297 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0873 624 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524(InterPro)
Cone13ag0873 624 MobiDBLite consensus disorder prediction 1 192 - -
Cone13ag0873 624 MobiDBLite consensus disorder prediction 9 161 - -
Cone13ag0873 624 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 166 580 IPR047117 -
Cone13ag0873 624 Pfam Protein tyrosine and serine/threonine kinase 300 571 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0873 624 FunFam proline-rich receptor-like protein kinase PERK8 373 586 - -
Cone13ag0873 624 Gene3D Phosphorylase Kinase; domain 1 273 372 - -
Cone13ag0873 624 SUPERFAMILY Protein kinase-like (PK-like) 278 572 IPR011009 -
Cone13ag0873 624 SMART serkin_6 297 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0873 624 FunFam Proline-rich receptor-like protein kinase PERK8 270 372 - -
Cone13ag0873 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0873 Cone-Chr13:7771553 Cone16ag0598 Cone-Chr16:7757238 2.23E-181 dispersed
Cone13ag0873 Cone-Chr13:7771553 Cone6ag0487 Cone-Chr6:2421458 1.85E-208 wgd
Cone13ag0873 Cone-Chr13:7771553 Cone9ag0499 Cone-Chr9:2387964 1.17E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82034 PF00010 HLH 1.70E-10 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0873 - - - 0.0