Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0880 ATGATTCATATACCAATGGAGATTTTCTGGGTTGTGGCCTTGCTTTTCTTATGGAGCTCTTCTTCTGCATATAGCTCTCTTACGGCAAAAGGTGTCAACTATGAAGTTCAAGCTTTGATGACCATTAAAAATAGTCTAGTGGATCCTCGTTCCATTCTGATTTGGGATGAACATGCTGTGGATCCATGTAATTGGATTATGATCACTTGCTCTTCTGATAAATCAGTAATTGGCCTAGGAGCTCCAAGTCAGAATTTATCAGGCACACTCTCACCAAGCGTTGTAAACTTGACTAATCTCCAATCTCTGTTGCTTCAGGATAATATGATTTCCGGGCCGATCCCATCTGAGCTTGGGAACCTTCTGAAGCTCGATACGCTCGACCTTTCGAATAATAATTTATCTGGAGAAATTCCTTCTACTCTCTCTAATTTGAAAAGCCTGCAATATCTGCGGTTGAAAAATAACAGTCTTTCTGGTGAAATTCCTTCATCAATAGCTAACATGACTCAGCTCGCCTTGCTGGACTTGTCTTACAATAACTTGAGCGGCCCTCTACCCAGATTGCACACTAAAACATTCAACCTTATCGGAAATTCTCTGATATGTTCGACCGTACCAAAACAAGAATGCAATGGAACCACTCCAATGCCTCTACCCTTCACTGTCAACACTTCCCAAAATCCTCAATCTTCCGGGACACCAAAGGGCCGGAAGATCGCCATAGCCTTGGGGTCGAGCTTAGGCAGCCTATGTCTCCTTACTCTCGCCTTCACTTTCTTTCTTTGGCAGAAACAAAAAGCCAATCGGCAAATATTATTAGACGCTAACGAACAACACTTAAAAGAAGTTTGCCTAGGGAACCTAAAGAAGTTCCCATTCCGAGAACTCCAGATTGCCACAAACAACTTCAGTAACAAAAATTTGGTCGGAAAGGGCGGTTTTGGAAATGTCTATAAAGGGTCTCTTCAAGACGGAACGGTTGTGGCGGTTAAACGGCTCAAGGATGGAAATGCAGCCGGTGGTGAGATCCAATTTCAGACTGAGGTTGAAATGATTAGCCTGGCGGTGCACCGGAATCTCCTCAAGCTCTATGGGTTTTGTATGACGGCCACTGAGCGGCTTCTTGTTTACCCTTACATGTCCAATGGGAGTGTTGCTTCTCGTCTCAAAGCAAAGCCATCTCTAGATTGGAATACAAGGAAACGAATAGGATTAGGAGCAGCAAGAGGGTTACTTTACCTACACGAGCAATGTGATCCCAAGATAATTCATAGAGACGTGAAGGCTGCAAATATACTACTCGACGATGATTGTGAAGCCGTGGTGGGAGATTTCGGCCTAGCAAAGCTATTGGACCATAGAGAATCACATGTATCAACTGCAGTAAGAGGCACTGTAGGCCACATTGCACCTGAATATCTCTCTACCGGCCAGTCCTCTGAGAAAACGGACGTGTTCGGGTTCGGAATTTTGCTTCTTGAGTTGATATCTGGCCAAAGAGCACTTGAGTTCGGAAAAGTGGCAAACCAGAAAGGAGCAATGCTTGATTGGGTGAAGAAAATTCACCAAGAAAAAAAGCTTGACCTGCTTGTTGACAAAAAGATAAGCTATGATCGGATTGAGCTGGAAGAAATGGTTCGGGTTGCGCTCCTATGCACTCAATATCTTCCGAGTCATCGGCCGAAGATGTCAGAAGTGGTCCGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCTCAGAGAGTAGACTCAACAAGTGGTAGTAGAGCAAATGAATTTTCTTATTCGGAAAGATACTCCGATCTTACTGATGACTCTTCATTGCTTGCACAAGCAATGGAGCTTTCTGGACCAAGATGA 1872 44.12 MIHIPMEIFWVVALLFLWSSSSAYSSLTAKGVNYEVQALMTIKNSLVDPRSILIWDEHAVDPCNWIMITCSSDKSVIGLGAPSQNLSGTLSPSVVNLTNLQSLLLQDNMISGPIPSELGNLLKLDTLDLSNNNLSGEIPSTLSNLKSLQYLRLKNNSLSGEIPSSIANMTQLALLDLSYNNLSGPLPRLHTKTFNLIGNSLICSTVPKQECNGTTPMPLPFTVNTSQNPQSSGTPKGRKIAIALGSSLGSLCLLTLAFTFFLWQKQKANRQILLDANEQHLKEVCLGNLKKFPFRELQIATNNFSNKNLVGKGGFGNVYKGSLQDGTVVAVKRLKDGNAAGGEIQFQTEVEMISLAVHRNLLKLYGFCMTATERLLVYPYMSNGSVASRLKAKPSLDWNTRKRIGLGAARGLLYLHEQCDPKIIHRDVKAANILLDDDCEAVVGDFGLAKLLDHRESHVSTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKVANQKGAMLDWVKKIHQEKKLDLLVDKKISYDRIELEEMVRVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRVDSTSGSRANEFSYSERYSDLTDDSSLLAQAMELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7810409 7813846 + Conep13aG0090800.1 Cone13ag0880 451267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0880 623 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515(InterPro)
Cone13ag0880 623 PRINTS Leucine-rich repeat signature 124 137 - -
Cone13ag0880 623 PRINTS Leucine-rich repeat signature 169 182 - -
Cone13ag0880 623 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Cone13ag0880 623 ProSiteProfiles Protein kinase domain profile. 304 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0880 623 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515(InterPro)
Cone13ag0880 623 FunFam Somatic embryogenesis receptor-like kinase 1 381 591 - -
Cone13ag0880 623 Gene3D Transferase(Phosphotransferase) domain 1 381 591 - -
Cone13ag0880 623 SUPERFAMILY Protein kinase-like (PK-like) 284 572 IPR011009 -
Cone13ag0880 623 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Cone13ag0880 623 ProSiteProfiles Leucine-rich repeat profile. 123 146 IPR001611 GO:0005515(InterPro)
Cone13ag0880 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0880 623 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Cone13ag0880 623 SUPERFAMILY L domain-like 34 306 - -
Cone13ag0880 623 SMART serkin_6 304 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0880 623 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Cone13ag0880 623 Pfam Protein tyrosine and serine/threonine kinase 307 571 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0880 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 623 - -
Cone13ag0880 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 213 - -
Cone13ag0880 623 Gene3D Ribonuclease Inhibitor 32 213 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0880 Cone-Chr13:7810409 Cone9ag0505 Cone-Chr9:2417772 8.38E-233 dispersed
Cone13ag0880 Cone-Chr13:7810409 Cone16ag0596 Cone-Chr16:7751145 4.96E-78 wgd
Cone13ag0880 Cone-Chr13:7810409 Cone19ag0878 Cone-Chr19:6886699 0 wgd
Cone13ag0880 Cone-Chr13:7810409 Cone6ag0493 Cone-Chr6:2454752 2.42E-278 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82035 PF00646 F-box 2.20E-09 CL0271 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0880 - - - 0.0