Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0883 | ATGGTGGATCCATATAACCCGAACCTATGGGGCCAAGCAACCAACTCACAAAACTTAGGATTTCCCGACCTTAATGTTCATAACACTCCATTATTGATAGAGGGAGTTGTCTTGCCTGGAATAGTGCCACCGGGCTTATCCCAACTCTCAACCGATTCTGCTTTCATAGAGCGCGCAGCTCGGTTTTCGTCCTTCAATGGAGGGAATCTCTGTGACATGATGAGTCCTTTAAAGATTGCGGAGTCTACAAATCTTTTTTGTCATAGAGTTCCCGAAAGCGATGAGTTGAGACTGGTATCTTCCAGGCAATCTTCCAGAGACGTCTCGTTGTCTGTTGACCGTACTGCTCCCCATGGAGTGAGTCCAACTAACAACAAGCGAAAAAGTAGTGATGGTCTTGAATCGGATGAAGCCGAGTTTAGTGGTGGTGGTGGTGAGGCCGTAGGCGAGCCCAGTTGGGAACCTTCTTCCCCAAAGGGGCTTATTAGCTCGAAGAAGTGGAAAAGAGGCGGGAAGAAATCGGAACTTGATCGAGCCAAAGGAGCTGTACAGGAAAATGAGGAAATGGCAAAAGATGACATGGTAAAAGAGCAGAAGGGAAACCAAGAAATTACTCCCACGACTACTAACAAGGCCATGATGAAACAAGGTAAACAAGGGTCTCAAGCTTTGAATCAAGTCAAAGAAGAATATATTCATGTTAGAGCTAGACGCGGCCAAGCGACAAATAGCCATAGTCTAGCAGAAAGAGTAAGGAGAGAGAAGATCAGTGAGAGGATGAAGTTCCTTCAAGACCTAGTCCCTGGTTGCAGCAAGGTAACGGGAAAGGCGGTGATGCTCGATGAAATCATAAGCTATGTACAATCATTACAACGGCAAGTCGAATTTTTGTCGATGAAACTAGCAACCGTCAATCCGTGGACGGATTTGAACATAGAAGGGCTTCAAGCAAAGAATATTTTTCAATCAAGGCCCGGTCCATCAGCCTTGTTGGGATTTTCTCCGGATGTACCTACGCTTTATTCTTCGCTAAATCAATCTCACCATGGACTTATACCAACAGGCCTGCATCGGGGCTCGTCAGATATTCTTAGACAGACCATTAATTCCCAGTTGAATCCAATGCTTAGTGGATTTAAGGACCCTTCTCAGATATCAAAAGCATGGCAGGACGAGCTACACCATGTTGTGCAGATGAGATTCAACGGTTCTCTGCCCCCGGAAAATACGAAAGTTGAGCTTTGA | 1245 | 45.62 | MVDPYNPNLWGQATNSQNLGFPDLNVHNTPLLIEGVVLPGIVPPGLSQLSTDSAFIERAARFSSFNGGNLCDMMSPLKIAESTNLFCHRVPESDELRLVSSRQSSRDVSLSVDRTAPHGVSPTNNKRKSSDGLESDEAEFSGGGGEAVGEPSWEPSSPKGLISSKKWKRGGKKSELDRAKGAVQENEEMAKDDMVKEQKGNQEITPTTTNKAMMKQGKQGSQALNQVKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIISYVQSLQRQVEFLSMKLATVNPWTDLNIEGLQAKNIFQSRPGPSALLGFSPDVPTLYSSLNQSHHGLIPTGLHRGSSDILRQTINSQLNPMLSGFKDPSQISKAWQDELHHVVQMRFNGSLPPENTKVEL | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 7839782 | 7843157 | + | Conep13aG0091100.1 | Cone13ag0883 | 451270 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0883 | 414 | Gene3D | - | 237 | 307 | IPR036638 | GO:0046983(InterPro) | |
Cone13ag0883 | 414 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 47 | 400 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cone13ag0883 | 414 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 238 | 307 | IPR036638 | GO:0046983(InterPro) | |
Cone13ag0883 | 414 | MobiDBLite | consensus disorder prediction | 102 | 128 | - | - | |
Cone13ag0883 | 414 | MobiDBLite | consensus disorder prediction | 168 | 199 | - | - | |
Cone13ag0883 | 414 | FunFam | Basic helix-loop-helix transcription factor | 237 | 309 | - | - | |
Cone13ag0883 | 414 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 240 | 290 | IPR011598 | GO:0046983(InterPro) | |
Cone13ag0883 | 414 | SMART | finulus | 246 | 296 | IPR011598 | GO:0046983(InterPro) | |
Cone13ag0883 | 414 | MobiDBLite | consensus disorder prediction | 97 | 206 | - | - | |
Cone13ag0883 | 414 | Pfam | Helix-loop-helix DNA-binding domain | 243 | 291 | IPR011598 | GO:0046983(InterPro) | |
Cone13ag0883 | 414 | CDD | bHLH_AtBPE_like | 230 | 315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0883 | Cone-Chr13:7839782 | Cone18ag0913 | Cone-Chr18:6505353 | 6.01E-54 | dispersed | |
Cone13ag0883 | Cone-Chr13:7839782 | Cone19ag0883 | Cone-Chr19:6924175 | 6.50E-230 | wgd | |
Cone13ag0883 | Cone-Chr13:7839782 | Cone6ag0499 | Cone-Chr6:2493438 | 4.67E-96 | wgd | |
Cone13ag0883 | Cone-Chr13:7839782 | Cone9ag0512 | Cone-Chr9:2454901 | 1.03E-101 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44642 | PF00069 | Pkinase | 2.10E-70 | CL0016 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0883 | - | - | - | 0.0 |