Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0883 ATGGTGGATCCATATAACCCGAACCTATGGGGCCAAGCAACCAACTCACAAAACTTAGGATTTCCCGACCTTAATGTTCATAACACTCCATTATTGATAGAGGGAGTTGTCTTGCCTGGAATAGTGCCACCGGGCTTATCCCAACTCTCAACCGATTCTGCTTTCATAGAGCGCGCAGCTCGGTTTTCGTCCTTCAATGGAGGGAATCTCTGTGACATGATGAGTCCTTTAAAGATTGCGGAGTCTACAAATCTTTTTTGTCATAGAGTTCCCGAAAGCGATGAGTTGAGACTGGTATCTTCCAGGCAATCTTCCAGAGACGTCTCGTTGTCTGTTGACCGTACTGCTCCCCATGGAGTGAGTCCAACTAACAACAAGCGAAAAAGTAGTGATGGTCTTGAATCGGATGAAGCCGAGTTTAGTGGTGGTGGTGGTGAGGCCGTAGGCGAGCCCAGTTGGGAACCTTCTTCCCCAAAGGGGCTTATTAGCTCGAAGAAGTGGAAAAGAGGCGGGAAGAAATCGGAACTTGATCGAGCCAAAGGAGCTGTACAGGAAAATGAGGAAATGGCAAAAGATGACATGGTAAAAGAGCAGAAGGGAAACCAAGAAATTACTCCCACGACTACTAACAAGGCCATGATGAAACAAGGTAAACAAGGGTCTCAAGCTTTGAATCAAGTCAAAGAAGAATATATTCATGTTAGAGCTAGACGCGGCCAAGCGACAAATAGCCATAGTCTAGCAGAAAGAGTAAGGAGAGAGAAGATCAGTGAGAGGATGAAGTTCCTTCAAGACCTAGTCCCTGGTTGCAGCAAGGTAACGGGAAAGGCGGTGATGCTCGATGAAATCATAAGCTATGTACAATCATTACAACGGCAAGTCGAATTTTTGTCGATGAAACTAGCAACCGTCAATCCGTGGACGGATTTGAACATAGAAGGGCTTCAAGCAAAGAATATTTTTCAATCAAGGCCCGGTCCATCAGCCTTGTTGGGATTTTCTCCGGATGTACCTACGCTTTATTCTTCGCTAAATCAATCTCACCATGGACTTATACCAACAGGCCTGCATCGGGGCTCGTCAGATATTCTTAGACAGACCATTAATTCCCAGTTGAATCCAATGCTTAGTGGATTTAAGGACCCTTCTCAGATATCAAAAGCATGGCAGGACGAGCTACACCATGTTGTGCAGATGAGATTCAACGGTTCTCTGCCCCCGGAAAATACGAAAGTTGAGCTTTGA 1245 45.62 MVDPYNPNLWGQATNSQNLGFPDLNVHNTPLLIEGVVLPGIVPPGLSQLSTDSAFIERAARFSSFNGGNLCDMMSPLKIAESTNLFCHRVPESDELRLVSSRQSSRDVSLSVDRTAPHGVSPTNNKRKSSDGLESDEAEFSGGGGEAVGEPSWEPSSPKGLISSKKWKRGGKKSELDRAKGAVQENEEMAKDDMVKEQKGNQEITPTTTNKAMMKQGKQGSQALNQVKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIISYVQSLQRQVEFLSMKLATVNPWTDLNIEGLQAKNIFQSRPGPSALLGFSPDVPTLYSSLNQSHHGLIPTGLHRGSSDILRQTINSQLNPMLSGFKDPSQISKAWQDELHHVVQMRFNGSLPPENTKVEL 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7839782 7843157 + Conep13aG0091100.1 Cone13ag0883 451270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0883 414 Gene3D - 237 307 IPR036638 GO:0046983(InterPro)
Cone13ag0883 414 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 47 400 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone13ag0883 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 307 IPR036638 GO:0046983(InterPro)
Cone13ag0883 414 MobiDBLite consensus disorder prediction 102 128 - -
Cone13ag0883 414 MobiDBLite consensus disorder prediction 168 199 - -
Cone13ag0883 414 FunFam Basic helix-loop-helix transcription factor 237 309 - -
Cone13ag0883 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 290 IPR011598 GO:0046983(InterPro)
Cone13ag0883 414 SMART finulus 246 296 IPR011598 GO:0046983(InterPro)
Cone13ag0883 414 MobiDBLite consensus disorder prediction 97 206 - -
Cone13ag0883 414 Pfam Helix-loop-helix DNA-binding domain 243 291 IPR011598 GO:0046983(InterPro)
Cone13ag0883 414 CDD bHLH_AtBPE_like 230 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0883 Cone-Chr13:7839782 Cone18ag0913 Cone-Chr18:6505353 6.01E-54 dispersed
Cone13ag0883 Cone-Chr13:7839782 Cone19ag0883 Cone-Chr19:6924175 6.50E-230 wgd
Cone13ag0883 Cone-Chr13:7839782 Cone6ag0499 Cone-Chr6:2493438 4.67E-96 wgd
Cone13ag0883 Cone-Chr13:7839782 Cone9ag0512 Cone-Chr9:2454901 1.03E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44642 PF00069 Pkinase 2.10E-70 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0883 - - - 0.0