Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0891 ATGGATGTCAGCATGATGAGCTTTTCACATGATATGGATAATGAATATGAGAAACTCATTAGAAGGATGAACCCTCCAATGGTTGTTATTGATAATGAAATCTGCAAGAATGCCACGGTTATAAGGGTGGATAGTGTAAACAAACACGGGATTCTTCTCGAAGTTGTTCAAGTTCTTGCTGATCTCAACCTCATAATAACTAAAGCTTACATATCCTCTGATGGCGGTTGGTTCATGGATGTTTTTAATGTCACCGATCAAGACGGAAACAAGGTCACGGATGAAGGAATTCTACACTACATAGAAAGATCTCTTGGCCCGGATTCGTGTTTTTCATCATCAATGAGATCGGTTGGTGTCAAATTCACTATAGATTACACAGTAATTGAGCTAACTGGAATGGATCGGCCTGGATTACTCTCTGAACTAAGTGCCATTCTAACTCACCTCAAATGCAACATAGTGAATGCTGAGGTTTGGACCCACAACTCTCGGGCTGCGGCTGTTGTCCACATCACTGATGTGGAAACAGGGTCTGCCATTACGGATCCCGAGCGACTCTCTAAAATCAAGGGATTACTATGCAATGTACTTAGAGGCAGCAACAACAAAACCCGGGGAGCTAAGACGGTGGTTTCGCATGGAGCCACTCACACGGAACGGAGGCTTCATCAGATGATGTTTGCTGATCGGGATTATGAGTGGGCCCACAATAACAATGATGTCATGTATGATAAGCAGAGGCCAAGTGTTGATGTTGTTAATTGGAAGGATAAGGATTACTCGGTTGTTACGATCCAAAGTAAGGACAGACCGAAGCTTTTGTTTGATACGGTTTTTACTTTGACGGATATGGGATATGTTGTTTTTCACGCGAATATTGATGCCGAAGGACTTGAAGCTTATCAGGAATACTTCATCCGGCATATTGATGGGTCACCCGTAAAATCCGAATCCGAGAGGCAAAGAGTTATACTATGTCTTGAAGCAGCTATTAGAAGAAGAGTCTCTGAGGGGTTGAAGCTTGAGTTATGCACAACGGATAGAGTTGGGCTACTATCTGATGTGACTAGAATCTTCCGGGAGAATAGCCTTACTGTTAGCCGAGCAGAAGTGACGACCAAATCGGGCAAGGCGGTAAACACGTTTTACGTTTGTGATGCTTCTGGATATCAGGTCGATTCTAAGACCATAAACTCAATAAGGGAAGCAATAGGGCAAACTATTCTTAAGGTGAAAGGTATTCCAGAGGAGATGATAAAACCCGTTTCTCAAGACTCTTCTCCGTCCCGCTTTCTCTTTGGCGGGCTCTTTAAATCCCGGTCTTTTGTGAGTTTTCGTTTGATCGGATTGTATTCTTGA 1362 43.1 MDVSMMSFSHDMDNEYEKLIRRMNPPMVVIDNEICKNATVIRVDSVNKHGILLEVVQVLADLNLIITKAYISSDGGWFMDVFNVTDQDGNKVTDEGILHYIERSLGPDSCFSSSMRSVGVKFTIDYTVIELTGMDRPGLLSELSAILTHLKCNIVNAEVWTHNSRAAAVVHITDVETGSAITDPERLSKIKGLLCNVLRGSNNKTRGAKTVVSHGATHTERRLHQMMFADRDYEWAHNNNDVMYDKQRPSVDVVNWKDKDYSVVTIQSKDRPKLLFDTVFTLTDMGYVVFHANIDAEGLEAYQEYFIRHIDGSPVKSESERQRVILCLEAAIRRRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVSRAEVTTKSGKAVNTFYVCDASGYQVDSKTINSIREAIGQTILKVKGIPEEMIKPVSQDSSPSRFLFGGLFKSRSFVSFRLIGLYS 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7892887 7895420 + Conep13aG0091900.1 Cone13ag0891 451278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0891 453 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 15 413 IPR040217 -
Cone13ag0891 453 ProSiteProfiles ACT domain profile. 40 120 IPR002912 -
Cone13ag0891 453 Pfam ACT domain 346 400 IPR002912 -
Cone13ag0891 453 Pfam ACT domain 127 179 IPR002912 -
Cone13ag0891 453 Pfam ACT domain 39 91 IPR002912 -
Cone13ag0891 453 CDD ACT_ACR_3 261 335 - -
Cone13ag0891 453 CDD ACT_ACR_2 127 200 - -
Cone13ag0891 453 Gene3D - 126 201 - -
Cone13ag0891 453 SUPERFAMILY ACT-like 35 100 IPR045865 -
Cone13ag0891 453 ProSiteProfiles ACT domain profile. 128 208 IPR002912 -
Cone13ag0891 453 SUPERFAMILY ACT-like 337 406 IPR045865 -
Cone13ag0891 453 ProSiteProfiles ACT domain profile. 341 417 IPR002912 -
Cone13ag0891 453 SUPERFAMILY ACT-like 125 199 IPR045865 -
Cone13ag0891 453 CDD ACT_ACR_1 38 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0891 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0891 Cone-Chr13:7892887 Cone16ag1007 Cone-Chr16:9824722 1.52E-174 dispersed
Cone13ag0891 Cone-Chr13:7892887 Cone19ag0890 Cone-Chr19:6964192 0.00E+00 wgd
Cone13ag0891 Cone-Chr13:7892887 Cone6ag0514 Cone-Chr6:2553284 1.13E-237 wgd
Cone13ag0891 Cone-Chr13:7892887 Cone9ag0526 Cone-Chr9:2511926 3.15E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002935 2 4 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 1 1 2 3 4 1 53