Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0895 ATGAACTTGGAGGAGAAAACTACAATGGAGTTCCTTCCACCTTCCGAGCATCTCTGCTACGTCCGCTGCAACTACTGCAACACTGTTCTTGCGGTTGGGATTCCATGCAAACGGTTGTTGGACACAGTGACAGTGAAATGTGGTCATTGTAGTAACCTCTCCTTCCTCACTACAAGGCCTCCACTTCAAGGCCAATGCCTTGATCCCCCACCCATCTCCCTCCAGGGATTTTGCAGTGACTTTCTCAAGGGCCAATCAAGCACTACATCCACCTCTTCTTCCACATCCAGTGAGCCCTTGTCTCCTAAACCACCACCTTTCGTTGTCAAACCTCCTGAGAAGAAGCACAGGCTCCCATCTGCTTACAATCGTTTCATGAAAGACGAGATACAGCGCATCAAAGCGGCCAACCCTGAGATCCCACATCGAGAAGCTTTCAGTGCAGCTGCAAAAAACTGGGCTAGGTACATCCCACATTCACCAGCTGGGTCTGTTTCTGGGAGTAATAACATCCATGTGTAA 522 49.43 MNLEEKTTMEFLPPSEHLCYVRCNYCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPLQGQCLDPPPISLQGFCSDFLKGQSSTTSTSSSTSSEPLSPKPPPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAANPEIPHREAFSAAAKNWARYIPHSPAGSVSGSNNIHV 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7927670 7928678 - Conep13aG0092300.1 Cone13ag0895 451282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0895 173 PANTHER PROTEIN YABBY 6-RELATED 14 168 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Cone13ag0895 173 CDD HMG-box_SF 117 153 - -
Cone13ag0895 173 SUPERFAMILY HMG-box 99 154 IPR036910 -
Cone13ag0895 173 Gene3D High mobility group box domain 91 158 IPR036910 -
Cone13ag0895 173 Pfam YABBY protein 14 158 IPR006780 GO:0007275(InterPro)
Cone13ag0895 173 MobiDBLite consensus disorder prediction 84 115 - -
Cone13ag0895 173 FunFam protein CRABS CLAW isoform X3 108 168 - -
Cone13ag0895 173 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0895 Cone-Chr13:7927670 Cone8ag0386 Cone-Chr8:2354763 9.34E-41 dispersed
Cone13ag0895 Cone-Chr13:7927670 Cone19ag0892 Cone-Chr19:6993345 5.27E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44643 PF08711 Med26 2.50E-08 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0895 K25796 - vvi:100261225 268.855