Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0896 ATGAAGCTCTACAATATTAGACTAGTTTATAAGAGTACTGTAGTACACGGCAGGGATTATTTGCCTGTATATAATGTGAGGTTAGGCGAGAAGTGGGCTACGTCATTGCGTATTAGCCAAAGAGCTATAGGTTTGGGAACAGGGAATTCGGAACACCGCTTTATTGTCGATACCCTTTTAATACTGTGGATTTACAGGAATGGGAAAGATCGCTACCCTTATCCAGTTGGATATCAAGCAGTTCGGGTTCATAGTGGCAGTGCATATAAGATGGAAATTCATGAAGGTTCTAAAGGACCTTTATTTGAGATTTCTTCTCCTGATGGGGATACAGTTTCTGGGCAAACCCCTGATATGGCCTGGGATAAGTTTCAGAGGAAAGGCTTTCCCCGCGTGAAGATTTGGCATGCAAAAAGGTTCTCATGCAAGATAGATGGTGTAGAGGTAGATTTTGGTTCTTTTGAAATGAGCAAGTCATTTTTTGATATTTACCTAGTTGCATCTGTGCATGTTTTGTCAGTAAATTGTCCTTATGCTCATTTAGTCACATGTGGGTCAAGTCAGACGAATTGCAAGTCATCTTATTATGCTACCATGGATATATTATTTCAGTTTATGGAGAAGATGTTTTTTGGATTAAAAAATCCCCTTGTTCAGCGGTTACTTAGGGAACTGGTGGCAAATGTCAGTGGAACAACAGAATTGAATTCATTATCCTCAAACTTCGACAATGGGCCTTCAGGAACAGGGCTTGATGACCGTTGGGCTGATACATGTACTTATCCTGATTTGCTACCTCTTGTGGCAAGGACCCCGGCTACAGGGAAGAGAAGTAGGAAACTTAAAGGCGAAAATGTGATGCCAGTCAACAAGGCTAACTCCAAAAAGCCCAGAACTGAAGATCTAATTATTTCCAAATTATCAAATTCGGTTCTGGTTGATGCGTTAGATGAAAAAAACCTGCTTTCTGCTGCCAAAGAAGAGACAACTACGGATGTGGAGAAAGAGGGTTTTGCAGGTTCTGAATGTAGAAAACGTACTCGAGTAGCTGACAACCTGTCTGCAGATGAAAATCCTCTTGATAGGTCAAATAATAACAAGGTGGAAGTCCCCAGTTTAACAATGAAGACAGAAGCTGATAATGGAGGGAATTTAGTTCAAGAAAACACTCTAGAGGAAAGTCATCTCTGTGCACCAGATATGGTAGATTTCATCCAAGTTATTTCTGATTCTGCTCCAATCATTAAGGATAATACTAATCTCAGACAGAAAAATGAATTAGCTGCTTTATCCGAAATAGTGGTACTCGATTCACTACCAGAAGAAAATATGGGCACAGTAAAGTCTAGTTATGATAGTAGTGATTTCGATTCAGTTGGTCAGGAAATGGTGGTGTCAATGATGGAAATTCTTCTTCCTGAATCAGTTCCTTTGCTTAAGAATAGAAAGAAGAAAAAGGTTCCCGGTGCCCCTTCAGAAAATTTTATTCGTGGGGTCAACTCTCAAGCAGAAAACGATGGAAGTGAATGCTATGCGACTCTTCAAAAAACTGCTACTAACAGTTCACCTATAACCAAGAGTAGAGATACAGATCGGGGTAAAGACATCAATAACCAGAATGCTGATATCAGTTCAAGTGTCCCAAGTTTTGAGCTTTTCAAATCCGTTGTACCCGACAGCTTAGAAGAGGATCAATGTCCAGACCATCCGTGTAACAAGGTGATCTTGTCTTCTCATATTACTGAAGTTGGTCAAGCAACTTCTAACGATGCGGCAGGTCCTATAAATTCTCTTTCTGAAGAAACCAAGCACCATAATACAAACTCGGAAGCACACACTTTTCAAATCAATTCCAAGGAAAAGGACTTCGAAATTGCACCGGATTGTAGTACAAATAATGACCTTGTGACCACCTGTTCAACAAGATCTAGTGTTCAGCTTTCAAATGGTAATAGTGCTTGTAACATAAGAGGAAAGTTGAGTTCTGTAGAACCACAAAGGGGGGAAATTGTTTCTCAGAGAGGAGTTGCAAAAACTGACAAACCTGTTTCTCAAGTTCCGAGAGTAGTGTACACCCGGAAAAAACCCCGAGGTGCATCTCATTTGACAACAAAGTTAAAGATTCCAGTCGCAGAAGACACCATGAGCAATCTTCCCAAGAAATCTCCTTCCACTAGATCTATGCATACCTTGGAGATTAATCAAACAATCACTTTACCAGAGAATCAACAAAACAAGGATCTTATTCACACTGAAGCCACACTTGGAGAAGCCCATGGTAAGTGCAGTGTGGATACTTCTGTAAAAACTGATTTTGGATTAAACAGTGTCCATCCTGCTTTACACAAAGACCAAGATGTAGTATGTGCCATTGACAAGGATACTTCCGGAATTTTGGATCCATCCATCTTACATATGGAAAAGTTTGAGGCTTCTGGTGACAGGAAGGTGGTCAGGCAAGCAGACATGTTAGAAACACACAGTTATGAGTCAACTAAAGAAAATTTAACAAATATCTGTGTCAATTATAAATCTGATGCCAAGGAAAATGGAGCTCTTAGAGATCTTCGTCTTCCCAGCAATGTAGAGCTGTATCATGAGCTAGAAGGAATGGTTCAGCTTGTGGGGTGCTATTTTCACCCGGTACCTGTTTTATCATTATTCCTTGGTAGAAAAGAGAATGCAATATACATTTGTGTGCTGTGTGGTCTTCCGGTGGACAAGAATAGAACTCTCTTCACCTACAAGGTGGAAACGGAAGAACCAAAAATAGGGTACCCATCTTGTCTTGGCCACACATCAGTTACAATGCCAGTTCTGAAAGATAATTTTGGAAAAGAAATCATACTGGAAAGATCTGGTTTCCAGTTGACTCCAGAAGGAGAACTTCTAGTCTTACTTGACAGCATCAGGACACCTTACTGCAGGGCAGGGAAAGTTAATTGTTCATGCTCCACATGTTCATGGGACTATGAGGAGAATGTAGTGAAGATCGTGCAAGTAGAACATGGTTATGTCTCAGTAGTGACAAAACTGAAAGCAGCCAACCCTTTACATTGTATATTGGTCTGTAAACCTAATCATCTTATTGCTGTTGGCGAGAGTGGAAGGCTACATCTCTGGATTTTGAATTCAACTTGGAGCACACAGACAGGAAATTATATTATACCATCATATGATTGTGCATCTCCTGGCATAGTGGAAGTGAAGAAAGTTCCAAATTTTCCCGACCTTATCGTTGGTCATAACGGTTTCGATGAATTCAGTTTATGGGATATTTCCAGACGCTCATTCATGTCAAGATTCTCTTATTCAAACACCTCAGTCCATCAATTCTTTCCAACCAGTTCGTTTTGTTTGCAAAGAAAAGGCCTCTTCAACAACTCCAATATAGATGAGCATGTCAATGAGATGATTGCAGCAATGGACAAGATGACGTCTGACAAAACTGAGAAAAGTTGTCTTCAACTCAAGGGGGGAGAAAATATAACAATTTGTCTTTTTGTCTCAACCACATCAGTTTCAGATGTTCTAATCAATCACAAATCGGAAAAAGATTATCAGACAAGCCCAGAGGGAAGTTGGAAGCTAGCTCTACTTGCCAACAATACAGTCATCTTTGGAACCACATTCGAGTCAAGGGCTTCTGCAATGGGGGCATTAGCTGGTAAAGGAATAATTGGGACTAGAGACGGGCTTGTGTACATGTGGGAATTGTCTACTGGAACTAAACTCGGTACCCTTCTTCGTTTCAAAGGGTCTAGTGTTTCGAATTTTGCTATGGATGATGATGATTTTGGTGCTCTGGCTGTGGTCAGTGATGGTAAATTGCTGGTCTATCTCAAGTCTTTACTAGCCTCAAGTCTTAGAAAATAA 3876 40.43 MKLYNIRLVYKSTVVHGRDYLPVYNVRLGEKWATSLRISQRAIGLGTGNSEHRFIVDTLLILWIYRNGKDRYPYPVGYQAVRVHSGSAYKMEIHEGSKGPLFEISSPDGDTVSGQTPDMAWDKFQRKGFPRVKIWHAKRFSCKIDGVEVDFGSFEMSKSFFDIYLVASVHVLSVNCPYAHLVTCGSSQTNCKSSYYATMDILFQFMEKMFFGLKNPLVQRLLRELVANVSGTTELNSLSSNFDNGPSGTGLDDRWADTCTYPDLLPLVARTPATGKRSRKLKGENVMPVNKANSKKPRTEDLIISKLSNSVLVDALDEKNLLSAAKEETTTDVEKEGFAGSECRKRTRVADNLSADENPLDRSNNNKVEVPSLTMKTEADNGGNLVQENTLEESHLCAPDMVDFIQVISDSAPIIKDNTNLRQKNELAALSEIVVLDSLPEENMGTVKSSYDSSDFDSVGQEMVVSMMEILLPESVPLLKNRKKKKVPGAPSENFIRGVNSQAENDGSECYATLQKTATNSSPITKSRDTDRGKDINNQNADISSSVPSFELFKSVVPDSLEEDQCPDHPCNKVILSSHITEVGQATSNDAAGPINSLSEETKHHNTNSEAHTFQINSKEKDFEIAPDCSTNNDLVTTCSTRSSVQLSNGNSACNIRGKLSSVEPQRGEIVSQRGVAKTDKPVSQVPRVVYTRKKPRGASHLTTKLKIPVAEDTMSNLPKKSPSTRSMHTLEINQTITLPENQQNKDLIHTEATLGEAHGKCSVDTSVKTDFGLNSVHPALHKDQDVVCAIDKDTSGILDPSILHMEKFEASGDRKVVRQADMLETHSYESTKENLTNICVNYKSDAKENGALRDLRLPSNVELYHELEGMVQLVGCYFHPVPVLSLFLGRKENAIYICVLCGLPVDKNRTLFTYKVETEEPKIGYPSCLGHTSVTMPVLKDNFGKEIILERSGFQLTPEGELLVLLDSIRTPYCRAGKVNCSCSTCSWDYEENVVKIVQVEHGYVSVVTKLKAANPLHCILVCKPNHLIAVGESGRLHLWILNSTWSTQTGNYIIPSYDCASPGIVEVKKVPNFPDLIVGHNGFDEFSLWDISRRSFMSRFSYSNTSVHQFFPTSSFCLQRKGLFNNSNIDEHVNEMIAAMDKMTSDKTEKSCLQLKGGENITICLFVSTTSVSDVLINHKSEKDYQTSPEGSWKLALLANNTVIFGTTFESRASAMGALAGKGIIGTRDGLVYMWELSTGTKLGTLLRFKGSSVSNFAMDDDDFGALAVVSDGKLLVYLKSLLASSLRK 1291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7935681 7942182 + Conep13aG0092400.1 Cone13ag0896 451283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0896 1291 SUPERFAMILY WD40 repeat-like 987 1280 IPR036322 GO:0005515(InterPro)
Cone13ag0896 1291 Gene3D - 964 1284 IPR015943 GO:0005515(InterPro)
Cone13ag0896 1291 Gene3D - 65 159 - -
Cone13ag0896 1291 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 189 1264 IPR040092 GO:0005634(PANTHER)|GO:0051726(PANTHER)
Cone13ag0896 1291 MobiDBLite consensus disorder prediction 517 543 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0896 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g13 . . . . . . Bma14g01678 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0896 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008686 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 6 1 35