Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0897 ATGCCAGAGCTAACGACGCTGTATTCCTTGCAAGAAGTCTGTCAGCACAATACCAAAGATGACTGCTGGATCGTCATTGATCGCAAGTTATATGATGTTTCATCCTATATGGACGAGCACCCTGGTGGAGATGATGTATTCCTTGATTCAACGGGCAAAGATGAAGCCGATGAATTTGAAGATACTGATCATAGCAAAGAAGCGAGAGAGCTCGACGATGATGGATCTTTCCTTGATATTTCCTCCGAGAAGAAGAAGAAGAAGCAGCATCCATCGAGTTATGCTCAGAAATTGAGAGACTTTACAGAGAAATGCTGGACTCTTCCTGTGGCTTTAGTTACCGTTTCTGTCATAGTGAGCTTCCTATACTTGCGTAGGACTTAA 384 43.23 MPELTTLYSLQEVCQHNTKDDCWIVIDRKLYDVSSYMDEHPGGDDVFLDSTGKDEADEFEDTDHSKEARELDDDGSFLDISSEKKKKKQHPSSYAQKLRDFTEKCWTLPVALVTVSVIVSFLYLRRT 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7942550 7943343 + Conep13aG0092500.1 Cone13ag0897 451284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0897 127 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cone13ag0897 127 Gene3D - 4 97 IPR036400 -
Cone13ag0897 127 MobiDBLite consensus disorder prediction 56 95 - -
Cone13ag0897 127 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 71 IPR001199 -
Cone13ag0897 127 MobiDBLite consensus disorder prediction 56 89 - -
Cone13ag0897 127 FunFam Cytochrome b5 type B 3 90 - -
Cone13ag0897 127 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 71 IPR001199 -
Cone13ag0897 127 SMART Cyt_b5_2 8 82 IPR001199 -
Cone13ag0897 127 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 73 IPR036400 -
Cone13ag0897 127 PANTHER CYTOCHROME B5 5 118 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0897 K23490 - - rcu:8264695 149.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0897 Cone-Chr13:7942550 Cone7ag0386 Cone-Chr7:1704037 1.08E-21 dispersed
Cone13ag0897 Cone-Chr13:7942550 Cone19ag0893 Cone-Chr19:6999565 1.02E-19 wgd
Cone13ag0897 Cone-Chr13:7942550 Cone9ag0531 Cone-Chr9:2544585 1.33E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g19 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0897 . . Cone9ag0531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24