Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0898 ATGAATATATTCAAGCAGCTCATTCTCAAAAAACGCAAGTTTTCTTGTCTTCCAAACCATGGAGTGATTTCCTTCTTTCATTCATCCCCAGAAAGAAACGCCTCTGTAGAGGTCCATTCACCTGAGCAAGAAGTAGTCATTGCATTGGGAAGCAACGTAGGAGACAGACTGCATAATTTCAATGAGGCCTTACACTTAATGAAGAAATCCGGACTAAACATTTTTAGACACGGTTGCTTATATGAAACAGCCCCAGCATATGTAACTGACCAGCCTCAGTTTCTCAACTCAGCTGTTAGGGCAGTTACAAAGCTCGGTCCACATGAATTATTAAAAGCAATCAAGAAAATAGAGAAGGACTTAGGTCGTACAGATGGGATCAGGTACGGGCCAAGAACAATTGATTTGGATATTCTGTTTTACGGAAAATTCAAGGTCTATTCTGATATTCTTACTGTTCCTCATGAAAGAATTTGGGAAAGACCATTTGTATTGGCTCCTTTAGTGGATGTGATAGGCTTAGGTGCTGATAGTGACGTTGTTTCTTGCTGGCATTCTTTCTCCAAACACGGAGGACTTTTTGAATCATGGGAAAAATTAGGTGGGGAGTCTGTTATCGGAAAAGAAGGATTGAAACGGGTTTTGCCCATTGGAAATACCTTATGGGACTGGTCAGAAAAGACGTCTGTAATGGGTATTCTTAACCTCACCCCGGATAGTTTCAGTGATGGAGGCAAATTTCAGTCTGTCCAAACTGCAGTTTCTCAAGTCCGGTTGATGATTTCAGAGGGGGCCGACATGATTGATATTGGCGCCCAATCTACAAGGCCAATGGCTCGTAGGATTTCTACACAAGAAGAATTAGATAGGCTGATTCCAATTTTGGAAGCTGTTTTAGAGATGCCTGAAATAAAGGGTAAGCTTATATCCATAGATACTTTCAATTCAAAAGTTGCTCTAGAAGCAATCGACAAAGGGGCTCATATTATAAATGATATATCTGCCGGGCAGTTGGACCAAAACATGCATTCAGTAATTGCAGGTCTTAATGTTCCATATGTGGCAATGCATATGAGAGGGGACCCGTCTTCAATGCAAAACAATGAAAATTTGCAGTACGATGATGTTTGTAATGACATTGCCTCTGAGTTGTTCTTACGGATTAGAGAAGCGGAATTATCAGGAATTCCGGCTTGGAGGGTAATTTTGGATCCTGGAATTGGGTTTTCAAAGAATACGGAACAGAATTTGGAGGTTTTGACAGGTTTGCCTAGGATTCGAGCAGAGATTGCAAGGAGAAGTGTGGGTTTGTCTCATTCTCCAGTGTTGATCGGGCCTTCCAGAAAGAGATTTCTTGGTGAAGTTTGTTTGAGATCAGATGCGGGTGAGAGAGATTCGGCTACGGTTTCATCTGTTACGGTTGGAGTTTTAGGTGGGGCAGATATTGTAAGAGTTCATAATGTGCGAGATAACTTGGATGCTGTGAAGCTAGGTGATGCAATACTGAAGAAGAAGACATATCCAGCATGA 1530 41.57 MNIFKQLILKKRKFSCLPNHGVISFFHSSPERNASVEVHSPEQEVVIALGSNVGDRLHNFNEALHLMKKSGLNIFRHGCLYETAPAYVTDQPQFLNSAVRAVTKLGPHELLKAIKKIEKDLGRTDGIRYGPRTIDLDILFYGKFKVYSDILTVPHERIWERPFVLAPLVDVIGLGADSDVVSCWHSFSKHGGLFESWEKLGGESVIGKEGLKRVLPIGNTLWDWSEKTSVMGILNLTPDSFSDGGKFQSVQTAVSQVRLMISEGADMIDIGAQSTRPMARRISTQEELDRLIPILEAVLEMPEIKGKLISIDTFNSKVALEAIDKGAHIINDISAGQLDQNMHSVIAGLNVPYVAMHMRGDPSSMQNNENLQYDDVCNDIASELFLRIREAELSGIPAWRVILDPGIGFSKNTEQNLEVLTGLPRIRAEIARRSVGLSHSPVLIGPSRKRFLGEVCLRSDAGERDSATVSSVTVGVLGGADIVRVHNVRDNLDAVKLGDAILKKKTYPA 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7943604 7946136 - Conep13aG0092600.1 Cone13ag0898 451285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0898 509 CDD DHPS 228 496 IPR006390 GO:0004156(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 SUPERFAMILY 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 45 172 IPR035907 -
Cone13ag0898 509 SUPERFAMILY Dihydropteroate synthetase-like 217 503 IPR011005 GO:0044237(InterPro)
Cone13ag0898 509 ProSitePatterns Dihydropteroate synthase signature 2. 264 277 IPR000489 GO:0042558(InterPro)
Cone13ag0898 509 Gene3D - 209 507 IPR011005 GO:0044237(InterPro)
Cone13ag0898 509 FunFam Dihydropteroate synthase 215 506 - -
Cone13ag0898 509 NCBIfam dihydropteroate synthase 230 499 IPR006390 GO:0004156(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 Pfam Pterin binding enzyme 231 486 IPR000489 GO:0042558(InterPro)
Cone13ag0898 509 PANTHER FOLATE SYNTHESIS PROTEINS 35 503 IPR045031 GO:0004156(PANTHER)|GO:0009396(InterPro)|GO:0046654(PANTHER)
Cone13ag0898 509 CDD HPPK 45 171 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 NCBIfam 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 45 171 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 ProSiteProfiles Pterin-binding domain profile. 228 496 IPR000489 GO:0042558(InterPro)
Cone13ag0898 509 Pfam 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 46 171 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 ProSitePatterns 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 128 139 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 Gene3D - 42 182 IPR035907 -
Cone13ag0898 509 ProSitePatterns Dihydropteroate synthase signature 1. 230 245 IPR000489 GO:0042558(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0895 Cone-Chr19:7001557 Cone13ag0898 Cone-Chr13:7943604 7.21E-140 transposed
Cone13ag0898 Cone-Chr13:7943604 Cone19ag0894 Cone-Chr19:7000811 1.14E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0898 K13941 - mdm:103446277 751.895