Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0898 ATGAATATATTCAAGCAGCTCATTCTCAAAAAACGCAAGTTTTCTTGTCTTCCAAACCATGGAGTGATTTCCTTCTTTCATTCATCCCCAGAAAGAAACGCCTCTGTAGAGGTCCATTCACCTGAGCAAGAAGTAGTCATTGCATTGGGAAGCAACGTAGGAGACAGACTGCATAATTTCAATGAGGCCTTACACTTAATGAAGAAATCCGGACTAAACATTTTTAGACACGGTTGCTTATATGAAACAGCCCCAGCATATGTAACTGACCAGCCTCAGTTTCTCAACTCAGCTGTTAGGGCAGTTACAAAGCTCGGTCCACATGAATTATTAAAAGCAATCAAGAAAATAGAGAAGGACTTAGGTCGTACAGATGGGATCAGGTACGGGCCAAGAACAATTGATTTGGATATTCTGTTTTACGGAAAATTCAAGGTCTATTCTGATATTCTTACTGTTCCTCATGAAAGAATTTGGGAAAGACCATTTGTATTGGCTCCTTTAGTGGATGTGATAGGCTTAGGTGCTGATAGTGACGTTGTTTCTTGCTGGCATTCTTTCTCCAAACACGGAGGACTTTTTGAATCATGGGAAAAATTAGGTGGGGAGTCTGTTATCGGAAAAGAAGGATTGAAACGGGTTTTGCCCATTGGAAATACCTTATGGGACTGGTCAGAAAAGACGTCTGTAATGGGTATTCTTAACCTCACCCCGGATAGTTTCAGTGATGGAGGCAAATTTCAGTCTGTCCAAACTGCAGTTTCTCAAGTCCGGTTGATGATTTCAGAGGGGGCCGACATGATTGATATTGGCGCCCAATCTACAAGGCCAATGGCTCGTAGGATTTCTACACAAGAAGAATTAGATAGGCTGATTCCAATTTTGGAAGCTGTTTTAGAGATGCCTGAAATAAAGGGTAAGCTTATATCCATAGATACTTTCAATTCAAAAGTTGCTCTAGAAGCAATCGACAAAGGGGCTCATATTATAAATGATATATCTGCCGGGCAGTTGGACCAAAACATGCATTCAGTAATTGCAGGTCTTAATGTTCCATATGTGGCAATGCATATGAGAGGGGACCCGTCTTCAATGCAAAACAATGAAAATTTGCAGTACGATGATGTTTGTAATGACATTGCCTCTGAGTTGTTCTTACGGATTAGAGAAGCGGAATTATCAGGAATTCCGGCTTGGAGGGTAATTTTGGATCCTGGAATTGGGTTTTCAAAGAATACGGAACAGAATTTGGAGGTTTTGACAGGTTTGCCTAGGATTCGAGCAGAGATTGCAAGGAGAAGTGTGGGTTTGTCTCATTCTCCAGTGTTGATCGGGCCTTCCAGAAAGAGATTTCTTGGTGAAGTTTGTTTGAGATCAGATGCGGGTGAGAGAGATTCGGCTACGGTTTCATCTGTTACGGTTGGAGTTTTAGGTGGGGCAGATATTGTAAGAGTTCATAATGTGCGAGATAACTTGGATGCTGTGAAGCTAGGTGATGCAATACTGAAGAAGAAGACATATCCAGCATGA 1530 41.57 MNIFKQLILKKRKFSCLPNHGVISFFHSSPERNASVEVHSPEQEVVIALGSNVGDRLHNFNEALHLMKKSGLNIFRHGCLYETAPAYVTDQPQFLNSAVRAVTKLGPHELLKAIKKIEKDLGRTDGIRYGPRTIDLDILFYGKFKVYSDILTVPHERIWERPFVLAPLVDVIGLGADSDVVSCWHSFSKHGGLFESWEKLGGESVIGKEGLKRVLPIGNTLWDWSEKTSVMGILNLTPDSFSDGGKFQSVQTAVSQVRLMISEGADMIDIGAQSTRPMARRISTQEELDRLIPILEAVLEMPEIKGKLISIDTFNSKVALEAIDKGAHIINDISAGQLDQNMHSVIAGLNVPYVAMHMRGDPSSMQNNENLQYDDVCNDIASELFLRIREAELSGIPAWRVILDPGIGFSKNTEQNLEVLTGLPRIRAEIARRSVGLSHSPVLIGPSRKRFLGEVCLRSDAGERDSATVSSVTVGVLGGADIVRVHNVRDNLDAVKLGDAILKKKTYPA 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7943604 7946136 - Conep13aG0092600.1 Cone13ag0898 451285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0898 509 CDD DHPS 228 496 IPR006390 GO:0004156(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 SUPERFAMILY 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 45 172 IPR035907 -
Cone13ag0898 509 SUPERFAMILY Dihydropteroate synthetase-like 217 503 IPR011005 GO:0044237(InterPro)
Cone13ag0898 509 ProSitePatterns Dihydropteroate synthase signature 2. 264 277 IPR000489 GO:0042558(InterPro)
Cone13ag0898 509 Gene3D - 209 507 IPR011005 GO:0044237(InterPro)
Cone13ag0898 509 FunFam Dihydropteroate synthase 215 506 - -
Cone13ag0898 509 NCBIfam dihydropteroate synthase 230 499 IPR006390 GO:0004156(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 Pfam Pterin binding enzyme 231 486 IPR000489 GO:0042558(InterPro)
Cone13ag0898 509 PANTHER FOLATE SYNTHESIS PROTEINS 35 503 IPR045031 GO:0004156(PANTHER)|GO:0009396(InterPro)|GO:0046654(PANTHER)
Cone13ag0898 509 CDD HPPK 45 171 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 NCBIfam 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 45 171 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 ProSiteProfiles Pterin-binding domain profile. 228 496 IPR000489 GO:0042558(InterPro)
Cone13ag0898 509 Pfam 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 46 171 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 ProSitePatterns 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 128 139 IPR000550 GO:0003848(InterPro)|GO:0009396(InterPro)
Cone13ag0898 509 Gene3D - 42 182 IPR035907 -
Cone13ag0898 509 ProSitePatterns Dihydropteroate synthase signature 1. 230 245 IPR000489 GO:0042558(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0898 K13941 - - mdm:103446277 751.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0895 Cone-Chr19:7001557 Cone13ag0898 Cone-Chr13:7943604 7.21E-140 transposed
Cone13ag0898 Cone-Chr13:7943604 Cone19ag0894 Cone-Chr19:7000811 1.14E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g20 . . . . . Bpe10g00904 . Bma15g00128 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0898 Cone19ag0895 . . . . . . Blo06g00930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007691 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 2 1 35