Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0899 ATGGCTTCTCTCTCTTTCCCTCACTTTCTCTCTTTTCAGAGGTGTAGTTCGAATCGGCCGAACTATAGCTTCCCTTACCTCAATGTCGTTCAACTTCAGGATTTCAGATTCCAGAAGAAATGGTCACTCTCTGTAACTTCTAAGAAGAAAATTGCAGAAAGTGTAGCTCAAGAAGATGAGGTTGTTAATGAAAAGGAAGAAGCAGCAGAAAAGAAGACATCCAGAACAAGAAAACGGGCCACCCCACGTGCAAAGAAGAAAGCCATACAAAATTCCGAGCAGGAGAATTCTGAATTACTGGCAGTTAATGATTCTTCAAATGATGAAAGCTCCATTTCTGCATCGACCAAAGAATCCAAGAAAACCCCTCGAAAAACTACAAGAAGAGCTGCATCTAATTCTACTAGCACGGAGGAAGATAAAACAACCGAAAAGAAGGTAAAAAGGGGTCGAAAGGCAAAGAAGAAAAGTGATGACATTGATCATCAATTAAGTGAATCTAAAGTTAATGATAACGAGGAGTCTACATTTTTAACTAATATAGAAACTGAAAAAGAAGAGGACTCAGATTTAGATATTGGTGATGGAGAAGATATAAGTGACACGTATAGTTGGCCTCCTCTTGTCTGTTGTTTTGGCGCTGCTCAACATGCTTTCGTGCCTTCTGGAAGGCCAGCTAACCGACTAACAGACTATGAAATCCACGAGAGCAAGAAAGACGCTTTGTGGGCCCCGGAAAAGTTCGTTAGGGCGCCAGGGGGGTCTGCTGGAAGCATAGCAATTGCTCTGGCTAGCTTGGGTGGGAGAGTGGCTTTCATGGGGAAGCTAGGGGATGATGAGTATGGTCAAGCTATACTATATTATATGAATGTGAATAATGTTCAAACCCGTTCTGTTAAAGTTGATAGTAAGAAGTTAACAGCATTGTCTCAGATGAAGATCGGGAAAAGGGGTCGGTTGAGAATGACTTGTGTGAAGCCTTGTGCTGAGGATTCTTTGTCCAAGTCAGAGATTAATACTGATGTGCTAAAGGAGGCAAAGATATTCTACTTCAATACACATTCACTCCTTGATCAGAACATGAGATTGACTACCTTGAAAGCCATCAAAATTTCTAAGAAGCTAGGAGGAGTTATCTTTTATGACGTGAACCTTCCTTTACCTCTATGGCAATCCCATGATGAAACAAAACTACTTCTCGAGCAAGTATGGAATCTTGCAGATATTATCGAAATTACCAAGCAAGAACTTGAGTTTCTAACTGGGATCGAGCCCGCTGAGGAGTTTGACACCAAAAATAACGACGTCTCAAAGTTTATCCATTATGATCGGGAAGTAATTGCCCCAATTTGGCATAAGAATCTTAAGGTTCTGTTTGTAACTAATGGTACTTCTAAGGTACACTACTACACTGAGGAACATGATGGGTCTATTCTTGGAATGGAAGATCCCCCTATTACCCCTTTCACTTGTGATATGTCTGCTTCTGGAGATGGCATTGTTGCAGGTCTCTTGAGAATGTTGGCAGTGCAGCCAGAGTTAACTCTGGATAAACCTTACTTGGAGCGGACGATAAACTATGCAATTCAATGTGGGGTCATAGACCAGTGGATTCTGGGCCGAACCAGAGGATATCCTCCTAAAGATGATATGGAGGAAAACGTTGTTCCTGATGAGAATGGAATAAGGTCCATAACGGAAAGGAAATTCCGGACTTTAGAGCCTGTAAGTTTAACGTTTTAG 1743 41.54 MASLSFPHFLSFQRCSSNRPNYSFPYLNVVQLQDFRFQKKWSLSVTSKKKIAESVAQEDEVVNEKEEAAEKKTSRTRKRATPRAKKKAIQNSEQENSELLAVNDSSNDESSISASTKESKKTPRKTTRRAASNSTSTEEDKTTEKKVKRGRKAKKKSDDIDHQLSESKVNDNEESTFLTNIETEKEEDSDLDIGDGEDISDTYSWPPLVCCFGAAQHAFVPSGRPANRLTDYEIHESKKDALWAPEKFVRAPGGSAGSIAIALASLGGRVAFMGKLGDDEYGQAILYYMNVNNVQTRSVKVDSKKLTALSQMKIGKRGRLRMTCVKPCAEDSLSKSEINTDVLKEAKIFYFNTHSLLDQNMRLTTLKAIKISKKLGGVIFYDVNLPLPLWQSHDETKLLLEQVWNLADIIEITKQELEFLTGIEPAEEFDTKNNDVSKFIHYDREVIAPIWHKNLKVLFVTNGTSKVHYYTEEHDGSILGMEDPPITPFTCDMSASGDGIVAGLLRMLAVQPELTLDKPYLERTINYAIQCGVIDQWILGRTRGYPPKDDMEENVVPDENGIRSITERKFRTLEPVSLTF 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7946615 7949603 + Conep13aG0092700.1 Cone13ag0899 451286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0899 580 MobiDBLite consensus disorder prediction 52 75 - -
Cone13ag0899 580 SUPERFAMILY Ribokinase-like 237 553 IPR029056 -
Cone13ag0899 580 PANTHER HEXOKINASE FAMILY MEMBER 206 553 IPR050306 GO:0009658(PANTHER)|GO:0009662(PANTHER)|GO:0042644(PANTHER)|GO:0042793(PANTHER)
Cone13ag0899 580 MobiDBLite consensus disorder prediction 93 113 - -
Cone13ag0899 580 Pfam pfkB family carbohydrate kinase 238 509 IPR011611 -
Cone13ag0899 580 MobiDBLite consensus disorder prediction 154 169 - -
Cone13ag0899 580 FunFam Fructokinase-like 2, chloroplastic 209 559 - -
Cone13ag0899 580 Coils Coil 89 109 - -
Cone13ag0899 580 CDD bac_FRK 208 540 - -
Cone13ag0899 580 MobiDBLite consensus disorder prediction 52 194 - -
Cone13ag0899 580 Gene3D - 209 561 IPR029056 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0899 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0361 Cone-Chr10:1699753 Cone13ag0899 Cone-Chr13:7946615 1.52E-102 dispersed
Cone13ag0899 Cone-Chr13:7946615 Cone3ag0391 Cone-Chr3:1952864 4.73E-61 dispersed
Cone19ag0897 Cone-Chr19:7004718 Cone13ag0899 Cone-Chr13:7946615 7.86E-42 transposed
Cone13ag0899 Cone-Chr13:7946615 Cone19ag0896 Cone-Chr19:7003843 1.01E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g21 . . . . . Bpe10g00903 . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011114 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 31