Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0901 ATGGATCGCAGTTCCACACCTCGCCGGAACCGGAAACCTCAAACCAGATCGGATATATATTCCACCGTCATCGTCTACTCCGACTCCGATTCTGACTCCGATCATAATCCGAATGACCAGAAGAAGCCTCAACCGCGGCGCAAACAAGAGCAGGATCTCTACGCCACAATGATCTACAAGGACGATGCTCGAGACGGCGATGAAGAATTCGAAGATGACGACTCCTCTCTCCCTCCCTTACTTAAACGACTTCCCAAGGATTTCGGTGGTGGAGCTCCAATTGACTATGAGGACGATGATTTCAATTCAGATAACGACGCTGGGGATTTCGGCACCATGATCGTCAAATCTGACAAGAATCGACCTCAGAATCGGTATTCATCTTCCTCCAGTACGATAAAGTCTCGGAGTTCGCCGTTCTCGGATTCTAGGAAGCGAATGGGCGGCATTGGTGGTAGTGGTGAAGATGACGAGGACGAAGGAGGTGATAATGATCCGTTTTCAACGTTCGTGGTGAGGTCCACGTTGAGGTCTAGCGAGAGAGAATCAGTGAGTGGGACTATGGTGAGGAGGACTAGTGGTGGTGGAGCTGGAGAGCTGGACGGCTCGACGTTGAGTAGAGCAGTGGCGAGTATGCAAGCAGTGGGAGAGATAGGGTTTGGTAAGCAGAGGAACGGGAATGGGCATTCGCATGGTGAAGAGGGTGGTGGTCGGCAGACTACGAAGATGTCATCGAGCTCGATTCCAGGGGGCCTTGCCTTGGAAGATCCTACTACCAAGTACGAGCTGCTAAACGAACTAGGTAAAGGGTCTTATGGGGCTGTTTACAAAGCTAGGGATATTAAAACATCCGAGCTTGTTGCTATTAAGGTCATATCACTAACTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAGATAGAGATGTTGCAGCAATGTAGTCATCCTAATGTTGTCCGCTACCTTGGGAGCTACCAAGGAGAAGAATATCTTTGGATAGTGATGGAGTACTGTGGCGGTGGAAGTGTTGCTGACTTAATGAATGTTACCGAGGAACCTTTAGAGGAGTATCAGATAGCATATATTTGCCGGGAGGCATTGAAGGGACTTGCATATCTGCACTCAATATTCAAGGTTCATAGAGATATCAAAGGTGGAAATATCTTACTAACTGAACAGGGAGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCTCAGCTTACAAGAACCATGTCAAAGCGCAACACTTTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGCTATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTATCTGCTATTGAAATGGCTGAGGGACTTCCTCCAAGATCAGCAGTTCATCCCATGAGGGTTTTGTTCATGATATCCATTGAGCCAGCTCCAATGCTCGAGGATAAGGAAAAATGGTCTTTGCTATTCCATGATTTTATTGCAAAGTGCCTAACAAAAGAACCTCGTGTACGTCCAACTGCAGCCGAGTTGCTGAAGCACAAGTTCATCGATAAATGCAAATGTGGAGCCACAGTGATGGTGCCAAAGATTGAAAAGGCTAGGGAAATTAGGACCGAAATGGCTCTTCAAGAACAAGCCCCGGGTGCAGCTCCAGATAATACTCTTGGAGCTCCAAAGGTTAATGAGGATTATGGAGATACTGTTCCTTCAAGGCCCCAGAATATTGCTCCTATGGCTGAAGAACTTTCCTCAGAAGCAGTTGACTTTGGCACAGTAATTGTTCATGGTGGAGATGAGATAGATGAGACAATTTCTCGGACCCGAACTGTGAAGGCTGAACCATCAACTTCTCCTTTACTTGATGAAGGCCCTTCCATCAGTGGGACAGGAGGAAAACAAGTTTATTCCGGTGTGGATGTTACAGGAGCGGTTGCAAATAATGCTCTAGATGAAAAATCACAGACACCGGGCACATCGTCACCCTCACTGCTTGGCATGCATGAGCAAAACTTCAAGATGAAAAGCATTTCTCAAGGGCGGGGCATCGGCCTGAGTATGGGCACTGGCACGGTAAAAGGTGAAACAGGTGGTTGGAAAGCCTTTGCCTTACAAGATAAGCTTTGGTCCATATATGCTACTGGCAGTACCGTGCCCATTCCATTCTTGAAGGCAACGGATATATCCCCAATTGCTTTATTATCAGACAATGTCCTTGGAGGCAAGCCAGAGGAAAACAGTGGAACTGCTGCAATAGAAGCGCTTCAGGAACTTTTTACTGGTGATACACAATCAAAGAAGGGTCGAAGAGGACAGAATGAGATTCCTCTGCCTCCAAGTGTTTACCGAACTCTCACTTCTAGCTCAACTCTATTGAACCTGGCACAGGCTCTAGCTTACCACAAAATGTGCTATGAAGATATGCCTCTTCAGGAGTTGCAAGCGACACAAGAGCAACAGACAATACAGAATCTTTCTGATACACTTAGAACTATTCTTCGACTCTAA 2502 46.84 MDRSSTPRRNRKPQTRSDIYSTVIVYSDSDSDSDHNPNDQKKPQPRRKQEQDLYATMIYKDDARDGDEEFEDDDSSLPPLLKRLPKDFGGGAPIDYEDDDFNSDNDAGDFGTMIVKSDKNRPQNRYSSSSSTIKSRSSPFSDSRKRMGGIGGSGEDDEDEGGDNDPFSTFVVRSTLRSSERESVSGTMVRRTSGGGAGELDGSTLSRAVASMQAVGEIGFGKQRNGNGHSHGEEGGGRQTTKMSSSSIPGGLALEDPTTKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLTEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEPLEEYQIAYICREALKGLAYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFIAKCLTKEPRVRPTAAELLKHKFIDKCKCGATVMVPKIEKAREIRTEMALQEQAPGAAPDNTLGAPKVNEDYGDTVPSRPQNIAPMAEELSSEAVDFGTVIVHGGDEIDETISRTRTVKAEPSTSPLLDEGPSISGTGGKQVYSGVDVTGAVANNALDEKSQTPGTSSPSLLGMHEQNFKMKSISQGRGIGLSMGTGTVKGETGGWKAFALQDKLWSIYATGSTVPIPFLKATDISPIALLSDNVLGGKPEENSGTAAIEALQELFTGDTQSKKGRRGQNEIPLPPSVYRTLTSSSTLLNLAQALAYHKMCYEDMPLQELQATQEQQTIQNLSDTLRTILRL 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7955235 7961815 - Conep13aG0092900.1 Cone13ag0901 451288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0901 833 ProSiteProfiles Protein kinase domain profile. 261 515 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0901 833 MobiDBLite consensus disorder prediction 1 202 - -
Cone13ag0901 833 ProSitePatterns Protein kinases ATP-binding region signature. 267 290 IPR017441 GO:0005524(InterPro)
Cone13ag0901 833 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 234 571 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Cone13ag0901 833 FunFam serine/threonine-protein kinase dst1 isoform X1 258 549 - -
Cone13ag0901 833 MobiDBLite consensus disorder prediction 117 138 - -
Cone13ag0901 833 MobiDBLite consensus disorder prediction 237 252 - -
Cone13ag0901 833 MobiDBLite consensus disorder prediction 607 631 - -
Cone13ag0901 833 CDD STKc_MAP4K3_like 260 515 - -
Cone13ag0901 833 MobiDBLite consensus disorder prediction 16 31 - -
Cone13ag0901 833 SUPERFAMILY Protein kinase-like (PK-like) 258 516 IPR011009 -
Cone13ag0901 833 Gene3D Transferase(Phosphotransferase) domain 1 257 548 - -
Cone13ag0901 833 MobiDBLite consensus disorder prediction 1 15 - -
Cone13ag0901 833 MobiDBLite consensus disorder prediction 168 190 - -
Cone13ag0901 833 SMART serkin_6 261 515 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0901 833 Pfam Protein kinase domain 261 515 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0901 833 MobiDBLite consensus disorder prediction 32 64 - -
Cone13ag0901 833 MobiDBLite consensus disorder prediction 219 254 - -
Cone13ag0901 833 FunFam Aurora kinase A 255 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0901 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0901 Cone-Chr13:7955235 Cone6ag0161 Cone-Chr6:791788 2.43E-78 dispersed
Cone13ag0901 Cone-Chr13:7955235 Cone19ag0899 Cone-Chr19:7013667 0 wgd
Cone13ag0901 Cone-Chr13:7955235 Cone2ag0776 Cone-Chr2:33726449 1.71E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g25 Blo01g00457 . . . . . . . . Cmo18g01122 . Cma18g01102 . Car18g01016 . Cpe09g00224 . . . . . . . . . . . . . . . Cone13ag0901 Cone19ag0899 . . . . . . . . . . . . Bma01g00127 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone14ag1056 . 1 681 MAP Kinase Kinase Kinase Kinase AT1G53165 60.0 4.4e-211 731.9
Cone9ag0187 . 1 687 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 2.7e-208 722.6
Cone6ag0161 . 9 685 MAP Kinase Kinase Kinase Kinase AT1G53165 58.8 6.1e-205 711.4
Cone13ag0901 . 259 515 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone19ag0899 . 260 516 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone9ag0187 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 61.8 2.5e-222 769.2
Cone14ag1056 . 1 680 MAP Kinase Kinase Kinase Kinase AT3G15220 61.3 4.7e-221 765.0
Cone6ag0161 . 9 684 MAP Kinase Kinase Kinase Kinase AT3G15220 61.5 1.3e-218 756.9
Cone13ag0901 . 260 515 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone19ag0899 . 261 516 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone13ag0901 . 1 833 MAP Kinase Kinase Kinase Kinase AT1G69220 60.1 1.1e-248 857.1
Cone19ag0899 . 8 834 MAP Kinase Kinase Kinase Kinase AT1G69220 59.1 2.0e-247 852.8
Cone6ag0161 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.2e-68 258.1
Cone9ag0187 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 2.2e-68 258.1
Cone14ag1056 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 9.2e-67 252.7
Cone18ag1363 . 3 663 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 3.7e-247 851.7
Cone11ag0114 . 19 679 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 7.0e-246 847.4
Cone8ag0549 . 8 724 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.4e-246 848.2
Cone12ag0550 . 8 723 MAP Kinase Kinase Kinase Kinase AT4G24100 64.4 6.4e-245 844.3
Cone12ag0550 . 11 724 MAP Kinase Kinase Kinase Kinase AT4G10730 65.7 5.3e-249 857.8
Cone8ag0549 . 11 725 MAP Kinase Kinase Kinase Kinase AT4G10730 65.8 1.2e-248 856.7
Cone20ag1129 . 4 368 MAP Kinase Kinase Kinase Kinase AT1G70430 60.5 4.0e-128 456.1
Cone17ag0279 . 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.9 2.0e-127 453.8
Cone18ag0623 . 4 479 MAP Kinase Kinase Kinase Kinase AT1G70430 50.6 6.4e-126 448.7
Cone11ag0941 . 4 407 MAP Kinase Kinase Kinase Kinase AT1G70430 55.4 7.1e-125 445.3
Cone12ag0550 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 8.4e-118 421.8
Cone8ag0549 . 5 367 MAP Kinase Kinase Kinase Kinase AT1G70430 55.9 8.7e-115 411.8
Cone17ag0279 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 7.0e-206 714.5
Cone20ag1129 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 58.1 2.0e-205 713.0
Cone18ag0623 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.8 1.3e-204 710.3
Cone11ag0941 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.5 2.8e-199 692.6
Cone11ag0114 . 20 342 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 8.9e-102 368.2
Cone18ag1363 . 4 326 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 4.1e-99 359.4
Cone11ag0941 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 2.4e-86 317.0
Cone17ag0279 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 6.9e-86 315.5
Cone18ag0623 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 1.2e-85 314.7
Cone20ag1129 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 3.4e-85 313.2
Cone12ag0550 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.2 3.2e-75 280.0
Cone4ag0304 . 15 493 MAP Kinase Kinase Kinase Kinase AT4G14480 56.6 1.0e-137 487.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82036 PF04091 Sec15 2.40E-77 CL0295 Cone PK