Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0904 ATGGGGGAAGCAAACGAAGGAAAAAGAAGCAGAGCAATGGAGAAATTCTCTCTACAAACAGACAAGTACCCAAGGGATCTACTGCAGAGATTCACGTGCAGCGGCAATTCGAACCAATCCCAATTCGAAAGAGGAGGACGACAAGATTCAGAAGAGATCGAACTAAATCTCGGCCTCTCATTAGGCGGACGATTCGGGGTCGATAAGAATCCGAATAAGAAGCTAATTCGATCCTCGTCAATCGCCGGAACAATCCCGCTTTTGAGAGAAGAAACCGCCACAACACCGCCGTCTACGGCGGCGACTTACTCATCACTCATAAGAACCTCCTCTCTTCCGACGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAATTACAGACTTTGAGAAGATTAGAAGCAAAGAGGAGGAGGTCAGAGAAACAGAGAAATAAAGGAGGAGGGTATAATAGTGGGAGTGGTGTTATTAGAGGGTGTTTAGATGAAGAAAGGAGAGAAAATGAGGGTTTGATGATTGGATTGAATTTGAGAGAAAATAGTAGTAGCAATATTTATAATAACAATAAGCAAGCTCTTCCATTTGGGTTGCCGAATTGGGCGGCGGCCACTAGGCAAGCTCTGGTTGGTGGAGCTGTTTTGGGACAAGGTGGTGCTGCTTCTCAAGGCTCGATCGAATCTCAAGGCGGGAGCTCGTCCGGGATGTCGGAATTGGAGAGTAAGCCTCTTCAAGGCTCGAGTAGTTGTGGCGAAGCAAGAAGCCCGTGTAGTAACCAGCCAATAACAGAACGAGGCAACCAGGATACGATGGGATCTTCCGGAACAAAACCAATCAAGAACCTGTCCCGAACATCCAGCATGGAGATGGAGATAAATCCATCTAAGAAACCAGAATCTTCCTCCGAGCACAGGACGAGGAAAGAGATTGGGGTGAATGCTGTGAAAGACATGCCGTGTGTTTTCACAATAGGCGACGGCCCAAACGGGCGAAAAGTAGAAGGGATTTTATACAAATATGGAAAAGGGGAAGAGGTTTGGATAATGTGCGTTTGCCATGGGGACTTTTTGTCCCCAGCTGAGTTCGTCAAACATGCTGGTGGAGGTGAAGTGGCTCATCCACTTAGGCATATAGTTGTAAACCCAAACTCTTCTTCTTCTTTGCTGTAA 1164 47.16 MGEANEGKRSRAMEKFSLQTDKYPRDLLQRFTCSGNSNQSQFERGGRQDSEEIELNLGLSLGGRFGVDKNPNKKLIRSSSIAGTIPLLREETATTPPSTAATYSSLIRTSSLPTETEEEWRKRKELQTLRRLEAKRRRSEKQRNKGGGYNSGSGVIRGCLDEERRENEGLMIGLNLRENSSSNIYNNNKQALPFGLPNWAAATRQALVGGAVLGQGGAASQGSIESQGGSSSGMSELESKPLQGSSSCGEARSPCSNQPITERGNQDTMGSSGTKPIKNLSRTSSMEMEINPSKKPESSSEHRTRKEIGVNAVKDMPCVFTIGDGPNGRKVEGILYKYGKGEEVWIMCVCHGDFLSPAEFVKHAGGGEVAHPLRHIVVNPNSSSSLL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7975384 7977814 + Conep13aG0093200.1 Cone13ag0904 451291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0904 387 Pfam Tify domain binding domain 346 378 IPR032308 -
Cone13ag0904 387 MobiDBLite consensus disorder prediction 216 305 - -
Cone13ag0904 387 PANTHER AFP HOMOLOG 2 2 382 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Cone13ag0904 387 MobiDBLite consensus disorder prediction 134 156 - -
Cone13ag0904 387 MobiDBLite consensus disorder prediction 219 293 - -
Cone13ag0904 387 Pfam Ethylene-responsive binding factor-associated repression 49 83 IPR012463 -
Cone13ag0904 387 Coils Coil 122 142 - -
Cone13ag0904 387 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 106 142 IPR032310 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0904 Cone-Chr13:7975384 Cone16ag0502 Cone-Chr16:7097339 1.40E-43 dispersed
Cone13ag0904 Cone-Chr13:7975384 Cone16ag0212 Cone-Chr16:1424181 2.00E-26 wgd
Cone13ag0904 Cone-Chr13:7975384 Cone19ag0901 Cone-Chr19:7024991 2.06E-233 wgd
Cone13ag0904 Cone-Chr13:7975384 Cone2ag0797 Cone-Chr2:33992579 7.65E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0904 - - - 0.0