Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0906 ATGAGTTTTCCGGGTTCGTCGAGAAAAATGAAATGCCATCTTCTGTTTGTAGCTTCTGAGAGATCCATTTTGCTTGAATTCAAACGCTCGGTTTCGGACCCATCTGGGATTCTCTCCAACTGGGTTTCCAACGCTTCTTCTTCAAATCACTGTTCCTGGTTCGGCGTTTCTTGCGACTCGAATTTCAGAGTTTCTTCGCTCAACATCACTTTCATTAGTGGCAAAAGAGGTAAATACCGAGCTTCTACTTGTTCTTCTAAGCTTTCACATTTTCCATACGAGGGATTCGGAATTAGAAGAGTTTGTTCACTTAGTGGTAGGAAATTAGTAGGAAAGTTGTCACCATTGATTGGGAATCTTACTCAGCTTAGGGGAATTTGGTTGAACGGGAAATTGGTTGAAAAATTTTCGGGTTTGAGATGGTTAAAGGTTTTGAATCTCGGGTTTAATAGCATTTATGGGGAAATTCCTGATTCACTCTCAAAATGTACTAGTTTGAGGACCCTAAATTTAGCTGGCAATCAAGTGAACGGTTCAATTCCCCAGTTTTTTAGTAATTTTTCGAGGTTGGAGGGGCTTTATTTGTCACAAAACAGGCTAACTGATTATTTTCCAGCTCTGTTCGGTGAGGGTTTTCAAAATCTTGAACATCTCGATCTTTCCGGAAACTTCCTAGTTGGTCCGATTCCAAGTAGTTTGGGTAATTCTTTACAGTTAAGAACTCTTTTGCTGTTTTCGAATATTTTTGACGAGGTCATTCCTCCAGAACTTGGCCGGCTTCAAATGCTTGAAGTTCTCGATGTTTCTAGAAACAGTCTGAGTGGTCTAATACCAGCTGAGCTCGGACGTTGCCGTAAATTATCAGTCCTTGTCCTCTCTAATCTTTACAGCACACTTTTGACTAAGCAGAATTCAAGTGAAGGAGATCCGTTCATTGAATCTCTAGGAGATTTTCCAGATGAGTACAATTATTTTAAAGGCACTATTCCGGATGAAATTACAAGTCTTCCCAACCTGAGGATACTTTGGGCACCAAGGGCCACTCTTGTCGGTGGGCTTTCGAGCAATTGGGCTGATTGTGAGAGCTTGGAAATGCTCAGCTTGGCCCAAAACCTACTAACCGGAGAGATAACCGGAGTATTTGAAAGGTGTAAAAATCTGCATTATCTCGATTTGAGCTCAAATAAGCTAACCGGAAAGCTTGATGAGAAGCTTCCTATTCCATGTATACCCTTCTTCGACATAAGCAATAATCTCATATCAGGACCCATTCCGAGCTATAATTACTGTTCTTGCCCCCGTGGGCCTTCATTTAAATTGCATCGTCTTGGCATTTACACTCCAGAAGATGCTTACCTATCGTTTTTTACTTGTCAATCTCAGCTTATCATGGATCTTCCATTTACAGGTAATAGTTTTTCTGTGATGCATAATTTTGGTAGTAACAACTTGAGTGGTAGTATTCAGAGCCCCCCTATTCCACTTAAGATGTTGGAAAATCGGACAGAGTACGCGTTTCTTGCTGACGGGAACAAGCTTAGTGGTTCATTTCCCGGAAGGTTACTTGAAAGGTGTGGTGAATTGAAAGGGATGATTGCAAATGTTAGTTATAATGATTTATCGGGTCATATTCCATTTGATGTTGGAAAAAAATGTAGATCTCTTCGATTAATGGATGCTTCTTATAATCAGATTTCTGGGTCAATACCTCCGAGTTTTGGAGATTTTGAATCTCTTGTGATTCTCGATTTGAGTGGGAATAAGTTGCAAGGTGTGATTCCAAGTGAAGTTCTCAAGATTTCCTCTAACAATATTTCAGGTGAGATTCCTCAAGGCCTTGTCTACTTGAGAAGATTAACTACTCTTCAGCTTAACAATAATAAACTCTCAGGGAAGATTCCTTCTGGTTTGGCTAACTTGACGGCGCTTTCATCATTTAATGCCTCATTCAATAACCTTTCCAGGTCTCTTCCATTAAATTATAATAATGCATTGAATTGTAGCAGCTTTCTTGTCAATCTATTTCTCTACTCTTGTCATATTGTTTCCATCACTGTTCCATCTCCAAATTTGCCTGATGACTATGGAGGAGATTCAAGGGATAACAAATCTTCTGCTTTCGGAAGCGACAGAAAAAGACGAATTGATGGACTCACCTCGATAGAGGTCGCATCGATTATATCTGCTTCGGTTATTGTGTCGGTTCTTCTAGCTCTTGTTATCCTCTTCTTCTACACGAGGAAATGGGTCCCTGATTCCCGGATTCAGGTTTCGGAATCAAAAGAAATTACGGTTTTTACCGACATTGGAATTCCGTTGACTTTCGATAGTATTGTCCGGTCAACTGGAAATTTCAGTGCTAGCAACTGTATTGGAAATGGAGGGTTTGGAATCACTTACAAGGCTGAAATCTTGCCTGGAACAATTGTTGCTGTAAAACGACTCTGCTTTGGACGGTTTCAAGGTGTCCAACAATTTCATGCGGAGATTAAGACTCTAGGAAGAGTAAGAAACCCTAATCTTGTAACACTTATCGGTTATCATGCAAGCGACACAGAAATGTTCCTAATATACAACTACTTACCGGGGGGCAATTTGGAGAACTTTATTAAGGAAAGATCAACTCGAGCCGTTGGTTGGAAGATTCTTCACAAGATCGCTCTAGACATTGCTCGGGCCTTGGCCTACCTCCACGACCAATGTGTTCCTCGGGTCCTACACCGAGACGTCAAGCCGAGCAACATATTGTTGGACAACGAGTTCAACGCTTACTTGTCTGATTTCGGTTTGTCGAGGCTCTTAGGAACTTCCGAGACTCACGCAACAACTGGCGTGGCTGGGACGTTCGGGTATGTAGCACCGGAGTATGCAATGACCTGTCGTGTCTCGGAAAAGGCTGATGTTTATAGCTATGGGGTGGTTTTGCTCGAGTTGCTATCAGATAAGAAGGCATTGGATCCCTCATTTTCTTCGCATGGGAACGGTTTCAATATCGTTTCTTGGGCTTGTATGCAGTTGAGGCTTGGGAAAGCTAAGGAGGTTTTCACAACCGGGCTTTGGGACCTTGCTCCTCATGATGATCTTGTTCAGGTGCTCCACTTGGCGGTTACATGTACGGTTGAGACTCTTTCAATGCGGCCTACTATGAGGCAGGTCGTTCAAAGATTGAAGCAAGTTCAACCGTGCTAG 3189 41.99 MSFPGSSRKMKCHLLFVASERSILLEFKRSVSDPSGILSNWVSNASSSNHCSWFGVSCDSNFRVSSLNITFISGKRGKYRASTCSSKLSHFPYEGFGIRRVCSLSGRKLVGKLSPLIGNLTQLRGIWLNGKLVEKFSGLRWLKVLNLGFNSIYGEIPDSLSKCTSLRTLNLAGNQVNGSIPQFFSNFSRLEGLYLSQNRLTDYFPALFGEGFQNLEHLDLSGNFLVGPIPSSLGNSLQLRTLLLFSNIFDEVIPPELGRLQMLEVLDVSRNSLSGLIPAELGRCRKLSVLVLSNLYSTLLTKQNSSEGDPFIESLGDFPDEYNYFKGTIPDEITSLPNLRILWAPRATLVGGLSSNWADCESLEMLSLAQNLLTGEITGVFERCKNLHYLDLSSNKLTGKLDEKLPIPCIPFFDISNNLISGPIPSYNYCSCPRGPSFKLHRLGIYTPEDAYLSFFTCQSQLIMDLPFTGNSFSVMHNFGSNNLSGSIQSPPIPLKMLENRTEYAFLADGNKLSGSFPGRLLERCGELKGMIANVSYNDLSGHIPFDVGKKCRSLRLMDASYNQISGSIPPSFGDFESLVILDLSGNKLQGVIPSEVLKISSNNISGEIPQGLVYLRRLTTLQLNNNKLSGKIPSGLANLTALSSFNASFNNLSRSLPLNYNNALNCSSFLVNLFLYSCHIVSITVPSPNLPDDYGGDSRDNKSSAFGSDRKRRIDGLTSIEVASIISASVIVSVLLALVILFFYTRKWVPDSRIQVSESKEITVFTDIGIPLTFDSIVRSTGNFSASNCIGNGGFGITYKAEILPGTIVAVKRLCFGRFQGVQQFHAEIKTLGRVRNPNLVTLIGYHASDTEMFLIYNYLPGGNLENFIKERSTRAVGWKILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDNEFNAYLSDFGLSRLLGTSETHATTGVAGTFGYVAPEYAMTCRVSEKADVYSYGVVLLELLSDKKALDPSFSSHGNGFNIVSWACMQLRLGKAKEVFTTGLWDLAPHDDLVQVLHLAVTCTVETLSMRPTMRQVVQRLKQVQPC 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7982991 7986635 - Conep13aG0093400.1 Cone13ag0906 451293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0906 1062 Gene3D Ribonuclease Inhibitor 471 685 IPR032675 -
Cone13ag0906 1062 Gene3D Ribonuclease Inhibitor 210 307 IPR032675 -
Cone13ag0906 1062 Pfam Leucine rich repeat N-terminal domain 18 59 IPR013210 -
Cone13ag0906 1062 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 98 299 - -
Cone13ag0906 1062 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 861 1062 - -
Cone13ag0906 1062 Pfam Leucine Rich Repeat 578 596 IPR001611 GO:0005515(InterPro)
Cone13ag0906 1062 Pfam Leucine Rich Repeat 618 640 IPR001611 GO:0005515(InterPro)
Cone13ag0906 1062 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515(InterPro)
Cone13ag0906 1062 Pfam Leucine Rich Repeat 263 284 IPR001611 GO:0005515(InterPro)
Cone13ag0906 1062 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cone13ag0906 1062 Pfam Leucine Rich Repeat 554 575 IPR001611 GO:0005515(InterPro)
Cone13ag0906 1062 Pfam Leucine Rich Repeat 386 403 IPR001611 GO:0005515(InterPro)
Cone13ag0906 1062 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Cone13ag0906 1062 SUPERFAMILY RNI-like 123 683 - -
Cone13ag0906 1062 Gene3D Transferase(Phosphotransferase) domain 1 861 1060 - -
Cone13ag0906 1062 SMART serkin_6 785 1059 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0906 1062 Gene3D Phosphorylase Kinase; domain 1 748 860 - -
Cone13ag0906 1062 PANTHER UNNAMED PRODUCT 315 1050 - -
Cone13ag0906 1062 ProSiteProfiles Protein kinase domain profile. 785 1062 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0906 1062 ProSiteProfiles Leucine-rich repeat profile. 578 599 IPR001611 GO:0005515(InterPro)
Cone13ag0906 1062 Gene3D Ribonuclease Inhibitor 16 209 IPR032675 -
Cone13ag0906 1062 Gene3D Ribonuclease Inhibitor 308 434 IPR032675 -
Cone13ag0906 1062 ProSitePatterns Protein kinases ATP-binding region signature. 791 813 IPR017441 GO:0005524(InterPro)
Cone13ag0906 1062 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 312 401 - -
Cone13ag0906 1062 Pfam Protein kinase domain 788 1054 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0906 1062 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0906 1062 SUPERFAMILY Protein kinase-like (PK-like) 763 1056 IPR011009 -
Cone13ag0906 1062 SMART LRR_typ_2 616 640 IPR003591 -
Cone13ag0906 1062 SMART LRR_typ_2 260 284 IPR003591 -
Cone13ag0906 1062 SMART LRR_typ_2 187 210 IPR003591 -
Cone13ag0906 1062 SMART LRR_typ_2 576 600 IPR003591 -
Cone13ag0906 1062 SMART LRR_typ_2 139 163 IPR003591 -
Cone13ag0906 1062 SMART LRR_typ_2 212 236 IPR003591 -
Cone13ag0906 1062 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 749 860 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0395 Cone-Chr11:1946801 Cone13ag0906 Cone-Chr13:7982991 3.43E-279 dispersed
Cone13ag0906 Cone-Chr13:7982991 Cone18ag1137 Cone-Chr18:8197882 5.01E-267 dispersed
Cone13ag0906 Cone-Chr13:7982991 Cone16ag0598 Cone-Chr16:7757238 3.71E-57 wgd
Cone13ag0906 Cone-Chr13:7982991 Cone19ag0902 Cone-Chr19:7030483 0 wgd
Cone13ag0906 Cone-Chr13:7982991 Cone6ag0525 Cone-Chr6:2608907 5.54E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82037 PF16845 SQAPI 1.80E-16 CL0121 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0906 - - - 0.0