Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0908 ATGGATTCACAGCAGCAACAGCGAGAAGGAGCTCCACCGCCTGGACCCGAAGGAAATTCATCCGCCATTTGCATAATGCTCTTCTCCTTTATCGTCATATGCGTCACGATGGTGATACCAACAACACCAAGCATTAAGAGTAGCTTAGCTATTCTGCACCAAGTTCCAGAAGGTCATGTTGGGGTATACTGGAGAGGAGGTGCCCTCTTGAAAACAATTACAGAGCCAGGTTTTCATATAAAGATGCCTCTCATAACCCATTATGAGCCTGTTCAAGTGACCCTTCAAACTGATCAGGTTAGAGATATTCCATGTGGGACAAAGGGAGGTGTCATGATAAACTTTGAGAAGATAGAGGTGGTCAATCGTCTTCGCAAGGAATTTGTGTTTGAGACACTGCTAAATTACGGTGTGCAATATGATAATACATGGATATATGATAAGATACATCACGAGATCAATCAGTTTTGTAGCTCTCACTCCCTTCAGCAAGTTTATATTGATGTGTTTGATCAGATTGATGAAAAAATGAAAGATGCTCTTCAAGGTGATTGCACACGCTATGCACCTGGTATTGAAATAATTAGTGTGCGAGTGACAAAGCCTACCATCCCAGATACTATAAGACGGAATTTTGAACAGATGGAAGAGGAACGCACTAAGGTCTTAATTGCTATCGAGAGACAGAAAGTAGTCGAGAAAGGGGCAGAGACAAGTAAGAAGATGGCAATCAGTGAAGCTGAGAAGAATGCTAATGTGAGCAAGATCCTCATGGAACAGAAGTTGATGGAGAAGGATAGTGCCAGGAGGCAGCAAGAAATTGATAACCAAATGTACCTTGCTCGGGAAAAGAGTCTAGCGGATGCGGATTTCTATCGTGTATTAAAAGAAGCCGAAGCAAACAAGTTGAAGCTCACACCCCAATTCCTTGAGCTTAAATTCATCGACGCCATTGCTGATAACACAAAAATCTTCTTTGGTGAAAAGGTACCCACTATGGTCTTAGATCAGAGGCTGCTTGGGAATTTCCTGCATCAGTCATCAGAAAAGGTGTCGAAAGGTGTATATGGGACGGAGAACTCGGACACTTGA 1092 42.77 MDSQQQQREGAPPPGPEGNSSAICIMLFSFIVICVTMVIPTTPSIKSSLAILHQVPEGHVGVYWRGGALLKTITEPGFHIKMPLITHYEPVQVTLQTDQVRDIPCGTKGGVMINFEKIEVVNRLRKEFVFETLLNYGVQYDNTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQGDCTRYAPGIEIISVRVTKPTIPDTIRRNFEQMEEERTKVLIAIERQKVVEKGAETSKKMAISEAEKNANVSKILMEQKLMEKDSARRQQEIDNQMYLAREKSLADADFYRVLKEAEANKLKLTPQFLELKFIDAIADNTKIFFGEKVPTMVLDQRLLGNFLHQSSEKVSKGVYGTENSDT 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7993134 7995923 - Conep13aG0093600.1 Cone13ag0908 451295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0908 363 SUPERFAMILY Band 7/SPFH domain 82 219 IPR036013 -
Cone13ag0908 363 Gene3D Band 7 domain 79 217 IPR036013 -
Cone13ag0908 363 SMART PHB_4 50 216 IPR001107 -
Cone13ag0908 363 PANTHER ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG 31 351 IPR033294 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015485(PANTHER)|GO:0031625(InterPro)|GO:0032933(PANTHER)
Cone13ag0908 363 Pfam SPFH domain / Band 7 family 54 227 IPR001107 -
Cone13ag0908 363 CDD SPFH_like_u3 48 337 IPR033294 GO:0005783(InterPro)|GO:0031625(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0908 K23341 - - rcu:8264722 586.645
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g43 . . . . . Bpe10g00898 . Bma15g00133 Cmo04g01786 Cmo18g01129 . Cma18g01107 . Car18g01021 . Cpe09g00220 Cpe01g01505 Bhi07g01495 Tan04g1007 . Lac13g0373 Hepe10g1793 . . Cla05g02393 . . Cco05g2641 Clacu05g2568 Cmu05g2425 Cre05g2542 Cone13ag0908 . Cone6ag0529 . Lsi04g00364 Csa05g02510 Chy10g01057 Cme10g00358 . . . . . . . . . . . Cma04g01700 . Car04g01737 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005352 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 3 1 1 1 1 1 2 3 1 40