Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0914 ATGGATGATAACGACCACAAGCCCGATCCATCTGGAACAGAGTTCACTGGCGATTCAAGCTGGACCACTTTCGCAGCCGACACCGACAGTGTCTATAACCTAATTTCCAGCAGTGTGAGACAGAGAAGTAGCAGTGTTCTCGGTGAATTCAGCTGGAATTTTCAGCCGGATGATGAGAATCGAGGAACAGATGAGTACGGACGGTTCCCGTACCTCGACCGGATCTGTTCGGAAGCTGATAGGTCTTCCGATTTGGCGGGAAGCTTCGAAGATGTGCCAACGGAGATAAACAACAACTACAATAACGTGTCCAGCTCGTTGACAAGCTCTGACCAGGCGGTTCCGATCGGATCTGTAGGAGATGCGTCGACGTCTAACCCGTCTTTGTCTTCGACCTCAAGTGAGGCTGGTGAACTGACGGAGAAGTCGACGGGATCCGGCGGGAAACCGCCTGAGATACCGAGCAAGAAGAATCAGAAGAAAGGGCAAAAGCGAATCCGGCAACAGAGAGTTGCATTCATAACTAAGAGCGAGGTTGATCATCTCGAAGATGGGTATCGGTGGCGGAAATATGGTCAGAAACCTGTAAAAAATAGTCCTTTCCCGAGGAGTTACTATCGGTGCACAAACAGCAAATGCACGGTGAAGAAGAGAGTGGAACGCTCGTCGGAAGATCCCACCCTTGTAATAACAACGTATGAAGGCCAACACTGTCATCACACCGTTGGATTCCCACGAGGTGGTGGGACCAATAGTATCTTCAGTCATATTGATCATCACCAACATCCTCCTCCTGCCTTTGCTTCAGCTCATCAATTTCTTCGCCCCGTTTCAGAAGTTAGTTACAATCACTCCAATCCGAACACTATCCATCAGCTACCCCATGAAAATATTATTAATCCTACTCCTCGAAGAAGTCCACAGTCACTTGATCACCAGCAGATCGTATCCGGAGATCAATCCCAATTTTTTCCGCCAGCAGATCGTGATCGTGATCGTGATGATGATCAGGCAGATGAAGGTCTGCTTGGCGACATTGTGCCACACAGAATGCGCAACAGATGA 1065 48.92 MDDNDHKPDPSGTEFTGDSSWTTFAADTDSVYNLISSSVRQRSSSVLGEFSWNFQPDDENRGTDEYGRFPYLDRICSEADRSSDLAGSFEDVPTEINNNYNNVSSSLTSSDQAVPIGSVGDASTSNPSLSSTSSEAGELTEKSTGSGGKPPEIPSKKNQKKGQKRIRQQRVAFITKSEVDHLEDGYRWRKYGQKPVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTLVITTYEGQHCHHTVGFPRGGGTNSIFSHIDHHQHPPPAFASAHQFLRPVSEVSYNHSNPNTIHQLPHENIINPTPRRSPQSLDHQQIVSGDQSQFFPPADRDRDRDDDQADEGLLGDIVPHRMRNR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8023565 8026212 - Conep13aG0094200.1 Cone13ag0914 451301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0914 354 Gene3D WRKY domain 169 235 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone13ag0914 354 MobiDBLite consensus disorder prediction 281 354 - -
Cone13ag0914 354 SUPERFAMILY WRKY DNA-binding domain 175 240 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone13ag0914 354 MobiDBLite consensus disorder prediction 325 354 - -
Cone13ag0914 354 FunFam WRKY transcription factor 57 168 242 - -
Cone13ag0914 354 ProSiteProfiles WRKY domain profile. 177 242 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone13ag0914 354 MobiDBLite consensus disorder prediction 281 321 - -
Cone13ag0914 354 MobiDBLite consensus disorder prediction 41 67 - -
Cone13ag0914 354 Pfam WRKY DNA -binding domain 183 239 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone13ag0914 354 MobiDBLite consensus disorder prediction 1 20 - -
Cone13ag0914 354 MobiDBLite consensus disorder prediction 107 141 - -
Cone13ag0914 354 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 101 280 IPR044810 GO:0003700(InterPro)
Cone13ag0914 354 SMART WRKY_cls 182 241 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone13ag0914 354 MobiDBLite consensus disorder prediction 107 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0319 Cone-Chr10:1518014 Cone13ag0914 Cone-Chr13:8023565 4.55E-23 dispersed
Cone13ag0914 Cone-Chr13:8023565 Cone5ag1608 Cone-Chr5:11290360 9.40E-42 dispersed
Cone13ag0914 Cone-Chr13:8023565 Cone19ag0910 Cone-Chr19:7071382 6.23E-205 wgd
Cone13ag0914 Cone-Chr13:8023565 Cone6ag0541 Cone-Chr6:2670377 6.64E-77 wgd
Cone13ag0914 Cone-Chr13:8023565 Cone9ag0551 Cone-Chr9:2624393 3.96E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44645 PF00931 NB-ARC 8.40E-41 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0914 - - - 0.0