Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0915 ATGGCGGCTTTAACGCATTCAAACCCAGTTTCGTATTTCAAACCCATCACTACCACCACTAACAATGATTTCAGCTTCAGAACCAGATCAGCTCCAAAGCTTTTCTTCTTCTCCTCCTCCTCCTTCTCCAGAACCCCATCTCCGAGCCGTGCAAGAAGAAAGCCGTCCGTGAAGAATGTAGCGAACGATCAACAGCGGACAGTCAAAGATCCTATCACGGGACTAAAAGATTCTCTACACTCATTCATTCCAGATTCGTCATCCATCGCATCGAGCATTAAATACCATGCCGAATTCACACCAGCTTTCTCCCCAGACCACTTCAGTCTCCCCAAAACATACTACGCAACGGCACAAAGCGTTCGTGACATGCTCATCATCAACTGGAACGCTACTTACAATTACTATGAAACGATGAATGCCAAGCAGGCTTACTATCTTTCCATGGAGTTCCTACAGGGTAGAGCATTGCTAAACGCGATCGGAAATTTAGAGCTTTCTGGAGCTTATGCAGACGCTTTACGAAAATTAGGCCACGATCTTGAGTCCGTCGCAAGTCAGGAACCAGATGCAGCACTAGGAAACGGAGGTCTAGGTAGGCTTGCATCCTGCTTTCTAGACTCCTTAGCAACACTAAATTATCCCGCCTGGGGTTATGGACTTAGATACAAATACGGCTTATTCAAACAATATCTCACAAAAGACGGCCAGGAAGAACTCGCCGAAAGTTGGCTCGAGATGGGAAATCCATGGGAAATAGTTAGAAATGATATCACATACCGTGTGAAATTCTACGGGGAAGTTGTTTCGGACCCGGATGGAGGAAGTAAAAAATGGGTTGGAGGAGAGAGCATAACTGCTGTTGCATATGATGTTCCAATTCCGGGTTATAAAACTAAAACAACCATAAACCTTAGGCTATGGTCCACAAAAGTGGGGCCCGAAGAATTCGATTTACGATCTTTTAATGATGGAGATCATGCCAATGCATACAGAGCGATTAAAAATGCTGAAAAGATCTGTTATGTACTGTATCCAGGGGATGAATCGATGGAGGGGAAGACTCTTCGTTTGAAACAGCAGTATACGTTATGCTCTGCTTCTCTTCAAGACATTATCTCTTGTTTCGAGAGGCGGTCTGGAAATTCTCTCGATTGGAGGAAGTTTCCGGAAAAGGTAGCGGTTCAGATGAATGACACTCATCCTACGCTTTGCATCCCGGAATTGATTAGGATATTGATGGATGTAAAGGGCTTGAGCTGGGAAGAAGCTTGGAATATTACTCAAAGAACTGTTGCATATACAAATCATACGGTTCTACCCGAAGCATTAGAAAAGTGGAGTTTGAGCCTTGTGAGGGAATTGCTTCCTCGACATGTTCAAATAATTGAAATGATCGATGAGGAGCTTATTCATGCTATTATTTCCAAGTACGGAACAGAAGATTTCGAGCTCTTGCAACAGAAACTGAAGGAAATGAGAATTCTAGATAACTTTGAGTTGCCTGAATCGGTTATGGAATTGCTTGCTAAATCTAAAGAGAATAGTAATCTTAGTCCTGTGGAGGAAGTAGAGGAAGTTAAAGATGAGGAAACTTTATCTTTAGATCAATCAGAAGAAGAAGAAGATTCTGAGAAGAAACAAGAGGAATCGGATGAAGCCAAAGCTGAAGAACCTCCTAAGTTGGTCCGAATGGCTAACTTATGTGTTGCTAGTGGTTATGCAGTTAATGGAGTTGCTCAGATTCACAGTGAAATCGTAAAAAATGAAGTCTTTAACGAATTCTACAAGTTATGGCCTGAGAAATTTCAAAACAAAACAAATGGAGTGACACCCAGAAGATGGATTCAGTTTTGCAATCCGGATTTAAGTAAAATCATAACAAAGTGGACTGGAACTGAAGACTGGGTACTAAATACAGAAAAACTCGAATTACTTCGCAAGTTTGCTGATAATGAAGATCTTCAATCGGAATGGAGGGAAGCAAAAAGAAGAAACAAGATGAAGGTTGCATCTTTCCTCGAAGAGAAAACCGGATATATTGTCAGCCCTGATGCAATGTTTGATGTACAGTTGAAGCGGATCCATGAATACAAGCGACAGTTATTGAACATTCTGGGGATCGTTTATCGCTATAAGAAGATGAAAGAATTGAGCCCCGAAGAAAGAAAAGGAAGATTCGTCCCTCGAGTTTGTATTTTTGGAGGGAAGGCATTTGCTACTTACGTTCAAGCCAAGAGAATAGTCAAGTTCATAACAGATGTTGGAGCTACTATTAATCATGATCCCGAAATAGGTGATCTATTGAAGGTGATCTTTGTCCCTGATTACAATGTGAGTGTTGCAGAAGTACTTATTCCGGGAAGTGAGCTATCCCAGCATATCAGTACTGCTGGAATGGAGGCAAGTGGTACCAGCAACATGAAGTTTGCAATGAACGGCTGCATACTAATTGGAACACTAGATGGGGCTAATGTCGAGATAAGAGAAGAAGTTGGAGAAGACAACTTCTTCCTGTTCGGGGCGAGGGCCGAGGAAATTACCGGGCTAAGACAAGAACGGGCAGAAGGCAAGTTCATGCCAGACCCACGCTTCGAAGAAGTTAAGGCCTTCGTAAGGACCGGAGTTTTTGGTCCATATAACTACGAAGAACTTATGGGGTCCTTAGAAGGAAATGAAGGGTATGGCCGTGCGGATTATTTCCTTGTTGGGAAGGATTTTCCGAGCTACATTGAATGCCAAGAAAAGGTCGACGAGGCATATAGAGATCAGAAGAGATGGACTAAGAAGTCGATACTGAACACGGCCGGATCCTTTAAGTTCAGTAGCGATAGAACAATTCATCAGTATGCAAGAGATATCTGGCGCATTGAACCTGTTTCCCTGCCTTGA 2892 42.7 MAALTHSNPVSYFKPITTTTNNDFSFRTRSAPKLFFFSSSSFSRTPSPSRARRKPSVKNVANDQQRTVKDPITGLKDSLHSFIPDSSSIASSIKYHAEFTPAFSPDHFSLPKTYYATAQSVRDMLIINWNATYNYYETMNAKQAYYLSMEFLQGRALLNAIGNLELSGAYADALRKLGHDLESVASQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQYLTKDGQEELAESWLEMGNPWEIVRNDITYRVKFYGEVVSDPDGGSKKWVGGESITAVAYDVPIPGYKTKTTINLRLWSTKVGPEEFDLRSFNDGDHANAYRAIKNAEKICYVLYPGDESMEGKTLRLKQQYTLCSASLQDIISCFERRSGNSLDWRKFPEKVAVQMNDTHPTLCIPELIRILMDVKGLSWEEAWNITQRTVAYTNHTVLPEALEKWSLSLVRELLPRHVQIIEMIDEELIHAIISKYGTEDFELLQQKLKEMRILDNFELPESVMELLAKSKENSNLSPVEEVEEVKDEETLSLDQSEEEEDSEKKQEESDEAKAEEPPKLVRMANLCVASGYAVNGVAQIHSEIVKNEVFNEFYKLWPEKFQNKTNGVTPRRWIQFCNPDLSKIITKWTGTEDWVLNTEKLELLRKFADNEDLQSEWREAKRRNKMKVASFLEEKTGYIVSPDAMFDVQLKRIHEYKRQLLNILGIVYRYKKMKELSPEERKGRFVPRVCIFGGKAFATYVQAKRIVKFITDVGATINHDPEIGDLLKVIFVPDYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIREEVGEDNFFLFGARAEEITGLRQERAEGKFMPDPRFEEVKAFVRTGVFGPYNYEELMGSLEGNEGYGRADYFLVGKDFPSYIECQEKVDEAYRDQKRWTKKSILNTAGSFKFSSDRTIHQYARDIWRIEPVSLP 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8029330 8033464 - Conep13aG0094300.1 Cone13ag0915 451302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0915 963 NCBIfam glycogen/starch/alpha-glucan family phosphorylase 537 957 IPR011833 GO:0004645(InterPro)|GO:0005975(InterPro)|GO:0030170(InterPro)
Cone13ag0915 963 Pfam Carbohydrate phosphorylase 174 498 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Cone13ag0915 963 Pfam Carbohydrate phosphorylase 540 957 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Cone13ag0915 963 ProSitePatterns Phosphorylase pyridoxal-phosphate attachment site. 801 813 IPR035090 -
Cone13ag0915 963 Gene3D Glycogen Phosphorylase B; 76 612 - -
Cone13ag0915 963 MobiDBLite consensus disorder prediction 41 64 - -
Cone13ag0915 963 PANTHER GLYCOGEN PHOSPHORYLASE 62 961 IPR000811 GO:0005737(PANTHER)|GO:0005975(InterPro)|GO:0005980(PANTHER)|GO:0008184(PANTHER)|GO:0008184(InterPro)|GO:0030170(PANTHER)
Cone13ag0915 963 FunFam Alpha-1,4 glucan phosphorylase 610 942 - -
Cone13ag0915 963 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 84 961 - -
Cone13ag0915 963 Gene3D Glycogen Phosphorylase B; 613 942 - -
Cone13ag0915 963 PIRSF Glucan_phosphorylase_GlgP 514 963 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Cone13ag0915 963 PIRSF Glucan_phosphorylase_GlgP 90 495 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Cone13ag0915 963 Coils Coil 521 557 - -
Cone13ag0915 963 MobiDBLite consensus disorder prediction 516 559 - -
Cone13ag0915 963 CDD GT35_Glycogen_Phosphorylase 92 957 - -
Cone13ag0915 963 MobiDBLite consensus disorder prediction 524 547 - -
Cone13ag0915 963 FunFam Alpha-1,4 glucan phosphorylase 83 512 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0915 Cone-Chr13:8029330 Cone2ag0527 Cone-Chr2:2903881 0 dispersed
Cone13ag0915 Cone-Chr13:8029330 Cone19ag0911 Cone-Chr19:7083211 8.63E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0915 K00688 - vvi:100257811 1495.33