Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0928 ATGTCGGACGAAGAGCACCACTTCGAGTCGAAGGCCGACGCCGGGGCTTCCAAAACCTACCCTCAGCAGGCTGGAACTATCCGTAAGAACGGTTACATTGTCATTAAGAACAGGCCTTGCAAGGTTGTTGAGGTCTCAACTTCCAAGACCGGAAAGCATGGTCATGCTAAATGTCACTTTGTCGGTATTGACATCTTCACTGCCAAAAAGCTTGAAGATATTGTCCCTTCGTCCCATAACTGTGATGTTCCTCATGTCAACCGTACTGACTACCAGCTGATCGATATCTCTGAGGATGGATTTGTTAGTTTGCTGACTGAGAATGGTAACACTAAAGATGACCTGAAGCTTCCTACCGATGAAAATCTGCTCTCGCAGATCAAGGATGGATTTGCCGAGGGGAAGGATCTGGTCGTGTCTGTCATGTCTGCAATGGGAGAGGAGCAGATCAACGCTCTCAAGGACATAGGCCCCAAGTAA 480 48.12 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8066860 8068411 + Conep13aG0095600.1 Cone13ag0928 451315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0928 159 MobiDBLite consensus disorder prediction 1 21 - -
Cone13ag0928 159 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Cone13ag0928 159 Gene3D - 1 85 IPR014722 -
Cone13ag0928 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cone13ag0928 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone13ag0928 159 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone13ag0928 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cone13ag0928 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone13ag0928 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone13ag0928 159 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Cone13ag0928 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone13ag0928 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone13ag0928 159 Gene3D - 86 158 IPR012340 -
Cone13ag0928 159 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Cone13ag0928 159 CDD S1_eIF5A 86 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0928 Cone-Chr13:8066860 Cone17ag0983 Cone-Chr17:7574352 1.19E-110 dispersed
Cone13ag0928 Cone-Chr13:8066860 Cone16ag0191 Cone-Chr16:1246812 8.66E-104 wgd
Cone13ag0928 Cone-Chr13:8066860 Cone19ag0922 Cone-Chr19:7121433 1.29E-72 wgd
Cone13ag0928 Cone-Chr13:8066860 Cone2ag0825 Cone-Chr2:34254365 1.05E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0928 K03263 - mtr:25490487 316.235