Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0949 ATGAAAATGGCTCAGACTGCATTTTTCTTGGTGGGTTTTCTTCTAGCGTTAGTGTCTTCCTGTGTTCATGGGTTTGGAGGAGGAGGTTGGAATAATGCTCATGCTACTTTCTATGGCGGAAGTGATGCTTCTGGAACAATGGGAGGAGCTTGTGGTTATGGGAATCTGTACAGTCAAGGCTATGGAACTAACACGGCAGCACTAAGCACAGCTCTGTTCAATAGTGGGCTAAGCTGTGGATCATGCTTTGAGATCAAGTGTGTAAATGCCCAAAAATGGTGCCTTCCTGGCTCCATTATAGTCACAGCCACCAATTTCTGCCCACCAAACACGGCATTACCCAACAGTGCCGGCGGTTGGTGTAATGCACCTCAGCAGCATTTCGACCTGTCACAGCCCGTTTTCCAGCACATCGCTCAATACAAAGCCGGAATCGTCCCCGTCTCTTATAGAAGGGTACCATGTAGGAGAAGTGGGGGCATAAGGTTCACAATCAATGGCCACTCCTACTTCAACTTGGTCCTTATAACGAACGTAGGTGGGGCAGGGGATGTACATGCGGTTTCGGTCAAAGGGTCAAAAACTGGATGGCAATCTATGTCTAGGAACTGGGGCCAGAACTGGCAGAGCAACGCCTATCTTAACGGGCAGAGCCTTTCGTTTAAGGTCACTACAAGTGATGGTGTAACTGTGATCTCTAGCAATGTTGCCCCCTCTAGGTGGTCCTTCGGCCAGACTTTTAGTGGGGCCCAATTTCACTAA 762 48.82 MKMAQTAFFLVGFLLALVSSCVHGFGGGGWNNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIKCVNAQKWCLPGSIIVTATNFCPPNTALPNSAGGWCNAPQQHFDLSQPVFQHIAQYKAGIVPVSYRRVPCRRSGGIRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSKTGWQSMSRNWGQNWQSNAYLNGQSLSFKVTTSDGVTVISSNVAPSRWSFGQTFSGAQFH 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8148708 8150488 + Conep13aG0097700.1 Cone13ag0949 451336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0949 253 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cone13ag0949 253 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cone13ag0949 253 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576(InterPro)
Cone13ag0949 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576(InterPro)
Cone13ag0949 253 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cone13ag0949 253 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576(InterPro)
Cone13ag0949 253 FunFam Expansin 160 252 - -
Cone13ag0949 253 SUPERFAMILY PHL pollen allergen 157 248 IPR036749 -
Cone13ag0949 253 SUPERFAMILY Barwin-like endoglucanases 14 178 IPR036908 -
Cone13ag0949 253 CDD DPBB_EXPA_N 29 155 - -
Cone13ag0949 253 Pfam Lytic transglycolase 65 150 IPR009009 -
Cone13ag0949 253 PRINTS Expansin signature 87 98 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 PRINTS Expansin signature 135 148 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 PRINTS Expansin signature 171 192 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 PRINTS Expansin signature 99 109 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 PRINTS Expansin signature 235 251 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 PRINTS Expansin signature 159 171 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 PRINTS Expansin signature 118 135 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 Gene3D - 160 253 IPR036749 -
Cone13ag0949 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Cone13ag0949 253 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cone13ag0949 253 PANTHER EXPANSIN-A15 7 252 IPR002963 GO:0009664(InterPro)
Cone13ag0949 253 SMART dpbb_1 65 150 IPR007112 -
Cone13ag0949 253 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Cone13ag0949 253 FunFam Expansin 19 156 - -
Cone13ag0949 253 Gene3D - 19 156 IPR036908 -
Cone13ag0949 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0949 Cone-Chr13:8148708 Cone4ag0531 Cone-Chr4:2389577 1.20E-138 dispersed
Cone13ag0065 Cone-Chr13:406449 Cone13ag0949 Cone-Chr13:8148708 3.21E-149 wgd
Cone13ag0949 Cone-Chr13:8148708 Cone19ag0939 Cone-Chr19:7191805 1.63E-179 wgd
Cone13ag0949 Cone-Chr13:8148708 Cone19ag0067 Cone-Chr19:419124 7.32E-148 wgd
Cone13ag0949 Cone-Chr13:8148708 Cone6ag0576 Cone-Chr6:2820883 2.76E-161 wgd
Cone13ag0949 Cone-Chr13:8148708 Cone7ag0505 Cone-Chr7:2331133 1.10E-136 wgd
Cone13ag0949 Cone-Chr13:8148708 Cone9ag0581 Cone-Chr9:2741577 1.12E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0949 - - - 0.0