Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0950 ATGATGGGAAGGGTGAAGCTAAAGATAAAGAGATTGGAGAATACAAATGGGCGGCAAGCTACTTATGCCAAAAGGAAGCATGGGATAATAAAGAAAGCGACTGAGTTGTCGATATTGTGCGATATTGATATCATCCTTCTTATGTTTTCTCCGACCGGAAAGCCTTCTTTATGCAGTGGAAAGCGAAGCATTGAAGAGGTTATTGCAAAGTTCGCTCAATTAACTCCACAAGAAAGGACAAAAAGGAAATTGGAAAGCCTCGAAGGTCTTAAAAAGACGTTTAAGAAACTGGATCACGATGTCAATATTCCAGACTTTCTTGGAACAAGCACCCAAACAATTGAGGATCTTACTGCTCAATCAAGGATGTTACGGACGCAACTTACTGAAGTACATAAGAGACTGAGCTGCTGGACCAACATTGATAAGATAAACAGTGTAGAGCAGTTGGCTCAAATGGAAGATTCATTACGGGAATCACTAAACCAACTTCGAACACATAAGGAAAATCTACAGAAGCTTTCTCTTATGCCATTGGAGTGCACTAATCAGTACCAAAATGGGATACATATACCTTTCAGAATGGATACCGAGCAACAGCTACAACCTTTTTCATGGATTACAAACAGTGACAATCAACATATCGTTTTTCCCGAGGAACCAAACTTGATTGCCCATCGGGACATGGAGTGCTCAGGTAGTTCCTCGTTTGCTAGCTATTCGGGTTATTTCGGGACAGGTAGAAGTTCGGAGATGTGTAATTCGGGACAAGAAAATGGAGTTCTACACGAGCTAAGCAGAACCGAATCTCTAAGGCAACAAGTCGGTGGGACCCAGTACCCCTACCTGCCATATAATTGTAATGTCTTGAGCAATGTGAAACTTGAGCCACAAGCTGATATGCGCCCACCAGAAAACCCCGTGGATTATCATGTCAATAGCAGCTTTCAAAACCCGAGAACTGCTTATGAAACTACTCATCATAGCTGGGCTTCTTCTTCCAGCCCATATCCTATTCCTTTATATGATGAGCGTCTATACCCTCAGCCAAATTGA 1056 42.14 MMGRVKLKIKRLENTNGRQATYAKRKHGIIKKATELSILCDIDIILLMFSPTGKPSLCSGKRSIEEVIAKFAQLTPQERTKRKLESLEGLKKTFKKLDHDVNIPDFLGTSTQTIEDLTAQSRMLRTQLTEVHKRLSCWTNIDKINSVEQLAQMEDSLRESLNQLRTHKENLQKLSLMPLECTNQYQNGIHIPFRMDTEQQLQPFSWITNSDNQHIVFPEEPNLIAHRDMECSGSSSFASYSGYFGTGRSSEMCNSGQENGVLHELSRTESLRQQVGGTQYPYLPYNCNVLSNVKLEPQADMRPPENPVDYHVNSSFQNPRTAYETTHHSWASSSSPYPIPLYDERLYPQPN 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8150653 8154341 - Conep13aG0097800.1 Cone13ag0950 451337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0950 351 FunFam Agamous-like MADS-box protein AGL30 15 96 - -
Cone13ag0950 351 Coils Coil 150 177 - -
Cone13ag0950 351 SMART madsneu2 2 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 Gene3D - 15 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 CDD MADS_SRF_like 3 82 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cone13ag0950 351 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 238 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone13ag0950 351 ProSiteProfiles MADS-box domain profile. 2 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0950 Cone-Chr13:8150653 Cone2ag0785 Cone-Chr2:33829864 6.15E-196 dispersed
Cone13ag0950 Cone-Chr13:8150653 Cone6ag1530 Cone-Chr6:12035959 4.64E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44647 PF05676 NDUF_B7 1.90E-28 CL0351 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0950 - - - 0.0