Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0950 ATGATGGGAAGGGTGAAGCTAAAGATAAAGAGATTGGAGAATACAAATGGGCGGCAAGCTACTTATGCCAAAAGGAAGCATGGGATAATAAAGAAAGCGACTGAGTTGTCGATATTGTGCGATATTGATATCATCCTTCTTATGTTTTCTCCGACCGGAAAGCCTTCTTTATGCAGTGGAAAGCGAAGCATTGAAGAGGTTATTGCAAAGTTCGCTCAATTAACTCCACAAGAAAGGACAAAAAGGAAATTGGAAAGCCTCGAAGGTCTTAAAAAGACGTTTAAGAAACTGGATCACGATGTCAATATTCCAGACTTTCTTGGAACAAGCACCCAAACAATTGAGGATCTTACTGCTCAATCAAGGATGTTACGGACGCAACTTACTGAAGTACATAAGAGACTGAGCTGCTGGACCAACATTGATAAGATAAACAGTGTAGAGCAGTTGGCTCAAATGGAAGATTCATTACGGGAATCACTAAACCAACTTCGAACACATAAGGAAAATCTACAGAAGCTTTCTCTTATGCCATTGGAGTGCACTAATCAGTACCAAAATGGGATACATATACCTTTCAGAATGGATACCGAGCAACAGCTACAACCTTTTTCATGGATTACAAACAGTGACAATCAACATATCGTTTTTCCCGAGGAACCAAACTTGATTGCCCATCGGGACATGGAGTGCTCAGGTAGTTCCTCGTTTGCTAGCTATTCGGGTTATTTCGGGACAGGTAGAAGTTCGGAGATGTGTAATTCGGGACAAGAAAATGGAGTTCTACACGAGCTAAGCAGAACCGAATCTCTAAGGCAACAAGTCGGTGGGACCCAGTACCCCTACCTGCCATATAATTGTAATGTCTTGAGCAATGTGAAACTTGAGCCACAAGCTGATATGCGCCCACCAGAAAACCCCGTGGATTATCATGTCAATAGCAGCTTTCAAAACCCGAGAACTGCTTATGAAACTACTCATCATAGCTGGGCTTCTTCTTCCAGCCCATATCCTATTCCTTTATATGATGAGCGTCTATACCCTCAGCCAAATTGA 1056 42.14 MMGRVKLKIKRLENTNGRQATYAKRKHGIIKKATELSILCDIDIILLMFSPTGKPSLCSGKRSIEEVIAKFAQLTPQERTKRKLESLEGLKKTFKKLDHDVNIPDFLGTSTQTIEDLTAQSRMLRTQLTEVHKRLSCWTNIDKINSVEQLAQMEDSLRESLNQLRTHKENLQKLSLMPLECTNQYQNGIHIPFRMDTEQQLQPFSWITNSDNQHIVFPEEPNLIAHRDMECSGSSSFASYSGYFGTGRSSEMCNSGQENGVLHELSRTESLRQQVGGTQYPYLPYNCNVLSNVKLEPQADMRPPENPVDYHVNSSFQNPRTAYETTHHSWASSSSPYPIPLYDERLYPQPN 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8150653 8154341 - Conep13aG0097800.1 Cone13ag0950 451337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0950 351 FunFam Agamous-like MADS-box protein AGL30 15 96 - -
Cone13ag0950 351 Coils Coil 150 177 - -
Cone13ag0950 351 SMART madsneu2 2 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 Gene3D - 15 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 CDD MADS_SRF_like 3 82 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cone13ag0950 351 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 238 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone13ag0950 351 ProSiteProfiles MADS-box domain profile. 2 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone13ag0950 351 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0950 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0950 Cone-Chr13:8150653 Cone2ag0785 Cone-Chr2:33829864 6.15E-196 dispersed
Cone13ag0950 Cone-Chr13:8150653 Cone6ag1530 Cone-Chr6:12035959 4.64E-15 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44647 PF05676 NDUF_B7 1.90E-28 CL0351 Cone TF