Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0950 | ATGATGGGAAGGGTGAAGCTAAAGATAAAGAGATTGGAGAATACAAATGGGCGGCAAGCTACTTATGCCAAAAGGAAGCATGGGATAATAAAGAAAGCGACTGAGTTGTCGATATTGTGCGATATTGATATCATCCTTCTTATGTTTTCTCCGACCGGAAAGCCTTCTTTATGCAGTGGAAAGCGAAGCATTGAAGAGGTTATTGCAAAGTTCGCTCAATTAACTCCACAAGAAAGGACAAAAAGGAAATTGGAAAGCCTCGAAGGTCTTAAAAAGACGTTTAAGAAACTGGATCACGATGTCAATATTCCAGACTTTCTTGGAACAAGCACCCAAACAATTGAGGATCTTACTGCTCAATCAAGGATGTTACGGACGCAACTTACTGAAGTACATAAGAGACTGAGCTGCTGGACCAACATTGATAAGATAAACAGTGTAGAGCAGTTGGCTCAAATGGAAGATTCATTACGGGAATCACTAAACCAACTTCGAACACATAAGGAAAATCTACAGAAGCTTTCTCTTATGCCATTGGAGTGCACTAATCAGTACCAAAATGGGATACATATACCTTTCAGAATGGATACCGAGCAACAGCTACAACCTTTTTCATGGATTACAAACAGTGACAATCAACATATCGTTTTTCCCGAGGAACCAAACTTGATTGCCCATCGGGACATGGAGTGCTCAGGTAGTTCCTCGTTTGCTAGCTATTCGGGTTATTTCGGGACAGGTAGAAGTTCGGAGATGTGTAATTCGGGACAAGAAAATGGAGTTCTACACGAGCTAAGCAGAACCGAATCTCTAAGGCAACAAGTCGGTGGGACCCAGTACCCCTACCTGCCATATAATTGTAATGTCTTGAGCAATGTGAAACTTGAGCCACAAGCTGATATGCGCCCACCAGAAAACCCCGTGGATTATCATGTCAATAGCAGCTTTCAAAACCCGAGAACTGCTTATGAAACTACTCATCATAGCTGGGCTTCTTCTTCCAGCCCATATCCTATTCCTTTATATGATGAGCGTCTATACCCTCAGCCAAATTGA | 1056 | 42.14 | MMGRVKLKIKRLENTNGRQATYAKRKHGIIKKATELSILCDIDIILLMFSPTGKPSLCSGKRSIEEVIAKFAQLTPQERTKRKLESLEGLKKTFKKLDHDVNIPDFLGTSTQTIEDLTAQSRMLRTQLTEVHKRLSCWTNIDKINSVEQLAQMEDSLRESLNQLRTHKENLQKLSLMPLECTNQYQNGIHIPFRMDTEQQLQPFSWITNSDNQHIVFPEEPNLIAHRDMECSGSSSFASYSGYFGTGRSSEMCNSGQENGVLHELSRTESLRQQVGGTQYPYLPYNCNVLSNVKLEPQADMRPPENPVDYHVNSSFQNPRTAYETTHHSWASSSSPYPIPLYDERLYPQPN | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8150653 | 8154341 | - | Conep13aG0097800.1 | Cone13ag0950 | 451337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0950 | 351 | FunFam | Agamous-like MADS-box protein AGL30 | 15 | 96 | - | - | |
Cone13ag0950 | 351 | Coils | Coil | 150 | 177 | - | - | |
Cone13ag0950 | 351 | SMART | madsneu2 | 2 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone13ag0950 | 351 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 55 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone13ag0950 | 351 | Gene3D | - | 15 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone13ag0950 | 351 | CDD | MADS_SRF_like | 3 | 82 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
Cone13ag0950 | 351 | PRINTS | MADS domain signature | 24 | 39 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone13ag0950 | 351 | PRINTS | MADS domain signature | 4 | 24 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone13ag0950 | 351 | PRINTS | MADS domain signature | 39 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone13ag0950 | 351 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 2 | 238 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cone13ag0950 | 351 | ProSiteProfiles | MADS-box domain profile. | 2 | 54 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone13ag0950 | 351 | SUPERFAMILY | SRF-like | 3 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0950 | Cone-Chr13:8150653 | Cone2ag0785 | Cone-Chr2:33829864 | 6.15E-196 | dispersed | |
Cone13ag0950 | Cone-Chr13:8150653 | Cone6ag1530 | Cone-Chr6:12035959 | 4.64E-15 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44647 | PF05676 | NDUF_B7 | 1.90E-28 | CL0351 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0950 | - | - | - | 0.0 |