Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0968 ATGGATCGAGGCGGATATACCGTACAAGTTACAGGCTTATCCCCAAGAGCGACGGAGAAGGACGTCTCTGATTTCTTCGCTTTCTCTGGTGGAATTCAACATGTCGAGATTGTAAGGTTTGGAGAAGATGCTTGTACTGCGTACGTGACGTTTAAAGATGAATATTCTCTCGAAACTGCTTGCTTGCTAAGTGGAGCCACGATTGTGGATCAACGTGTGTGCATAACCCGCTGGGGAAATCATGAAGATGAGTCTGATTTTTGGAATAGGCCTTGGAATCACCATGAAGATGAAACAGCCTCAACTCCTTCACAAACAAGCCAGTTTGTTCCTAGTGCTGGAGAAGCAGTATCGAAGGCTCAAGAAGTGATGAAAACCATGCTAACCCATGGCTATACGCTCGGAAAAGAAACATTAACCAGAGCAAAAGCGTTTGATGAATCTCATCAAGTATCAGCAACAGCAGCATCTAAGGTTGCTGATCTGAACCAAAGAATCGGTCTCTCCAACATGTTTTATGCAGGGGTTGGAGCTGTTAAATCTATGGATGAGAAATACCATGTGTCTCAGATCACCAAAACAGCTCTATCGGAAACTGGAAAAACAGCAGCATCAGCTGCAGATACTGTGGTCAAGAGCAGCTACTTCTCTACGGGAGCTCTCTGGGTCTCTGGTGCGCTTAATCGAGCCTCTAAGGCTGCAGCCGATATGGGTAGTCATGGTCTTAAGCAGTAA 735 45.58 MDRGGYTVQVTGLSPRATEKDVSDFFAFSGGIQHVEIVRFGEDACTAYVTFKDEYSLETACLLSGATIVDQRVCITRWGNHEDESDFWNRPWNHHEDETASTPSQTSQFVPSAGEAVSKAQEVMKTMLTHGYTLGKETLTRAKAFDESHQVSATAASKVADLNQRIGLSNMFYAGVGAVKSMDEKYHVSQITKTALSETGKTAASAADTVVKSSYFSTGALWVSGALNRASKAAADMGSHGLKQ 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8269314 8271117 + Conep13aG0099600.1 Cone13ag0968 451355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0968 244 SUPERFAMILY RNA-binding domain, RBD 5 82 IPR035979 GO:0003676(InterPro)
Cone13ag0968 244 Gene3D - 2 76 IPR012677 -
Cone13ag0968 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723(InterPro)
Cone13ag0968 244 Pfam RNA recognition motif 10 71 IPR000504 GO:0003723(InterPro)
Cone13ag0968 244 CDD RRM_Vip1_like 8 76 IPR034360 -
Cone13ag0968 244 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 5 239 - -
Cone13ag0968 244 SMART rrm1_1 7 77 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0968 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0968 Cone-Chr13:8269314 Cone3ag0553 Cone-Chr3:2725452 1.08E-37 dispersed
Cone13ag0968 Cone-Chr13:8269314 Cone16ag0857 Cone-Chr16:9125747 2.86E-80 wgd
Cone13ag0968 Cone-Chr13:8269314 Cone19ag0958 Cone-Chr19:7306273 2.38E-163 wgd
Cone13ag0968 Cone-Chr13:8269314 Cone2ag0186 Cone-Chr2:969882 1.47E-77 wgd
Cone13ag0968 Cone-Chr13:8269314 Cone8ag0603 Cone-Chr8:5284817 1.44E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68