Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0969 ATGTCTAGTAATGGAATGGCCTTCTTCCCAACACATTTCATGCGTCAAACATCTCACAATGAAGATCATCGCAATCAGCATCATGATCACCACCATCCTCTTTCCATTCTTAACCCAATTCTACCTGATCATCATGATCACTTTCATGGAGTTGCTTCCTTTCTAGGGAAAAGAACTATGTCATTTTCAGGTATTGATCAATTGGGTGGTGATCAAAAAGCCAAAAACGATACGATAAATGGAGAAGAAGATTTGTCTGATGATGATGAGTCGTCACAGGCAGGCGATCACAAGAAGAGAAGGCTTAACATAGAACAAGTGAAGACACTTGAGAAGAACTTTGAGTTAGGGAACAAGCTCGATCCCGAAAGGAAACTGCAGTTGGCTAGGGCTCTTGGTTTGCAGCCTAGACAGATTGCTATTTGGTTCCAAAATAGAAGGGCTAGATGGAAGATTAAGCAGTTGGAGAAAGATTATGAGGACCTTAAGATGCAATTTGATGCTACTAAAGCTCATAATGAATCGCTCTTGACTCAGAACCAGAAGCTCCAACAAGAGATAATGAGCCTAAAAAGTAAAGACTACCCAACAGAATCAATCAATCTGAATAAAGAGACAGAGGGGTGTTGTAGTAATAGAAGTGAGAGCAGCTCAGAGATCAACAAAGCAGCTAGTGATAGCCCATTATCAAGCTCTGATCCAGCAGCATTAATGAGCAAGACCCTGTTTCCAATATGCTCCATTAGATCTCCTCCACGAGTTCATGTCGTTACACAGCTCTTTCATGATCATCATCATCTTCAAAACCAGACGTGTAGTAATAATTATGATAGTAATATTGATCATGATCAAACGGGGAAAGAAGGAAGCTTGAGCAATTTGATATTCTCTGGAAACGTTGAAGATCAACCTGGGTTTTGGCCCTGGTTGGATCACCATCATCATCAACAACAACAACAACATTTCAATTGA 972 40.43 MSSNGMAFFPTHFMRQTSHNEDHRNQHHDHHHPLSILNPILPDHHDHFHGVASFLGKRTMSFSGIDQLGGDQKAKNDTINGEEDLSDDDESSQAGDHKKRRLNIEQVKTLEKNFELGNKLDPERKLQLARALGLQPRQIAIWFQNRRARWKIKQLEKDYEDLKMQFDATKAHNESLLTQNQKLQQEIMSLKSKDYPTESINLNKETEGCCSNRSESSSEINKAASDSPLSSSDPAALMSKTLFPICSIRSPPRVHVVTQLFHDHHHLQNQTCSNNYDSNIDHDQTGKEGSLSNLIFSGNVEDQPGFWPWLDHHHHQQQQQHFN 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8272664 8274171 + Conep13aG0099700.1 Cone13ag0969 451356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0969 323 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone13ag0969 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 82 231 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone13ag0969 323 MobiDBLite consensus disorder prediction 201 232 - -
Cone13ag0969 323 PRINTS Lambda-repressor HTH signature 124 133 IPR000047 GO:0003677(InterPro)
Cone13ag0969 323 PRINTS Lambda-repressor HTH signature 133 149 IPR000047 GO:0003677(InterPro)
Cone13ag0969 323 Pfam Homeobox associated leucine zipper 153 193 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone13ag0969 323 MobiDBLite consensus disorder prediction 18 34 - -
Cone13ag0969 323 Pfam Homeodomain 99 151 IPR001356 GO:0003677(InterPro)
Cone13ag0969 323 CDD homeodomain 98 154 IPR001356 GO:0003677(InterPro)
Cone13ag0969 323 FunFam Homeobox-leucine zipper protein ATHB-13 88 157 - -
Cone13ag0969 323 SMART HOX_1 96 157 IPR001356 GO:0003677(InterPro)
Cone13ag0969 323 Coils Coil 145 193 - -
Cone13ag0969 323 Gene3D - 89 160 - -
Cone13ag0969 323 SUPERFAMILY Homeodomain-like 91 154 IPR009057 -
Cone13ag0969 323 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677(InterPro)
Cone13ag0969 323 MobiDBLite consensus disorder prediction 66 101 - -
Cone13ag0969 323 MobiDBLite consensus disorder prediction 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0969 K09338 - - rcu:8286990 304.293
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0969 Cone-Chr13:8272664 Cone19ag0090 Cone-Chr19:519877 2.13E-28 dispersed
Cone13ag0969 Cone-Chr13:8272664 Cone16ag0859 Cone-Chr16:9133183 9.28E-48 wgd
Cone13ag0969 Cone-Chr13:8272664 Cone16ag0147 Cone-Chr16:853202 7.01E-27 wgd
Cone13ag0969 Cone-Chr13:8272664 Cone19ag0959 Cone-Chr19:7311391 4.77E-187 wgd
Cone13ag0969 Cone-Chr13:8272664 Cone2ag0185 Cone-Chr2:961623 9.19E-46 wgd
Cone13ag0969 Cone-Chr13:8272664 Cone6ag0604 Cone-Chr6:2966504 2.34E-68 wgd
Cone13ag0969 Cone-Chr13:8272664 Cone9ag0609 Cone-Chr9:2879326 4.67E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g879 Blo01g00421 Blo16g01125 Bda01g02167 Bda11g01227 Bpe13g01422 . Bma14g01636 . Cmo04g01722 Cmo18g01188 . . . Car18g01074 Sed06g1545 Cpe09g00164 Cpe01g01454 Bhi07g01589 Tan04g1101 Cmetu10g1011 Lac13g0301 Hepe10g1725 . . Cla05g02458 Cam05g2646 Cec05g2678 Cco05g2715 Clacu05g2649 Cmu05g2502 Cre05g2616 Cone13ag0969 Cone19ag0959 Cone6ag0604 Cone9ag0609 Lsi04g00442 Csa05g02432 Chy10g00985 Cme10g00433 . Blo11g00762 Bda07g01460 Bda11g01227 Bpe11g01633 Bpe02g02353 Bma01g00088 Bma06g00675 . Cmo04g02884 . Cma04g01643 . Car04g01684 Car15g00277 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030026 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44651 PF00083 Sugar_tr 1.00E-115 CL0015 Cone TF