Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0974 ATGAAGAAACCTTGTTCATTGAGCTCTTTCACTTTCTTGAACCATACCATCATCATTCTTTCCCTTCTTCTTCTTCTTCTTCTTCAAACTTCAAACGGACAGTTATCTTCGAGCGAAACCCGAATCCTGTTACAAGTCCGAAAGCATCTTGAATATCCTCAACTTCTTCAAAACTGGTCTTCAAACTGGACCGATTTCTGTTCTCTCCCTCCTTCAACTTCTCTCAAGATTTCCTGCTCAAACAATCACGTTACGGAAGTCACCATTCTCGGGAACAAAACCTCCACTGTTCACATGTCCAAACATTTCTCCATTGATGCTCTCTTCACTGACCTGACAAAGCTCTCTAAACTCAAAGTCCTGTCATTAGTCTCACTAGGTTTGTGGGGCCCACTCCCGTCTAAAATCAACCGCTTATCATCACTCGAAACGCTAAATCTCAGCTCGAATTCTATTTCTGGGATAATCCCGTCTTCAATCTCAACAATCTATAGCCTGAAGTCTCTTGTTCTAGCTCAAAATCTATTCAAAGGAAGTGTTCCTAATCTTGAAGGTCTTACAGCCTTAGAAGAATTGGATCTTTCCGGAAACTTCCTCGGACCCAGATTTCCTTCTCTGGGGAAAAGTCTTGTCATTATAGCACTTAGAAACAACAGCTTTAGATCTGAGATATCTTCACTTCTTATCAAAAGCTTCAATAAACTCGACCAATTTGATATCTCTCACAATAGCTTCATAGGCCCAATCACATCTTCTCTTTTCTCTCTTCCTTCAATTCAATACCTCAACTTAGCTTACAATCAATTTACTGGGGCTGTTTCTGTCAACACCACTTGCAATAGACAACTCAAATTTGTCGACATTTCACACAACCTTTTGATTGGGAAATTACCGTCTTGTATCGGCTCAAGTTCCTCAAATCGAGCGGTTAATACTTCGTGGAATTGTTTATCTTATGGGGATCCAAAAATCCAGCATACTAATTCTTTTTGCCATAAGGAAGCAATGGCTGTTAAGCCAGCAGGTACTAGTAGTTCTGAGAAGGCGATAGAGCCGAGCAAGAAACTAGGCCTAATGCTCGGAATTATTGGAGGCATAGTGGGACTCTGTGGGATTGTTTTGCTTTTGATTTTAGTGATTGTTAGAAGGAGAAGAATTAGAGAACATGCAGAGGATAAATTTGACCAATATGGTGCGGAGAAAACCTCTGTTCGAGGATCCCCATTGCCTAATATCGAACCAAGAAGAGTGGCTCAAAGAATGACAAACTCTGCACTTAATCTCCCACCGTATAGAGTTTTCACATTGGAAGAGATTGAAGAAGCCACAAACAACTTTGACCCATCAAGTTTAATCAAGGGAGGAGGGGCTCAAGAACAGTTATATAAAGGGAGGCTTAGTGATAACTCATTGGTGCTAGTGAGATGCATTAAGTTGAAGCAAAAGCATATGCCTCAAGCTTTGACTCAGCAAATGCATCAAGTATTGCAAGATCTAAGGCATAGACATTTGGTCAGTGTTCTTGGACACTGCATTGTTACTTATCAGGAACATGCTAATTATGCTGGTACCACTGTCTTTGTTGCAACTGAGCATGTTTCCAACTCCTCTTTAAGGGATTATCTCACGGATTGGAGAAGGAAGGAGATGCTAAAATGGCCACAGAGACTGGCAATTAGTATAAATACTGCAAGGGGAGTTCAGTTCTTGCACATGGGAATTACGCCTGGAATTTTCGGGAACAAGCTGAAGGTCGAGAACGTCGAGTTGGATACTACTCTTACTGCAAAAATAAGCAACTATAAAATTCCCTTCCCATTTAAGATGGAATCAGAGAACCCTAGCGATCAAGGACAAGATGTAGCTGGAAGAAAAGAGGATGAGGAGAAGGAAGATATATATGAGTTCGGTGTGATTCTTCTTCAAGTAATTACTGGGAAATTGATCACATCTGCAAGTGAAGTGGATGAACTTAAGCATCAGGTTGAGAAGGCAATAACAGAGGGAGCAACAAAATTGAGAGGAATAGTTGATCCCAACATTCAGGGTTCCTTCGCCTACGACTCGCTAAAAACAACCGTTCAAATCACAATGAACTGCCTTTGCACAGATTCAAGCAAACGACCTTCAATAGAAGATGTTCTCTGGAATTTGCAGTATTCGATGCAAGTTCAAGAAGGATGGACAAGTAGTGGAAATCTCAGTGCACAAATGTAG 2217 40.96 MKKPCSLSSFTFLNHTIIILSLLLLLLLQTSNGQLSSSETRILLQVRKHLEYPQLLQNWSSNWTDFCSLPPSTSLKISCSNNHVTEVTILGNKTSTVHMSKHFSIDALFTDLTKLSKLKVLSLVSLGLWGPLPSKINRLSSLETLNLSSNSISGIIPSSISTIYSLKSLVLAQNLFKGSVPNLEGLTALEELDLSGNFLGPRFPSLGKSLVIIALRNNSFRSEISSLLIKSFNKLDQFDISHNSFIGPITSSLFSLPSIQYLNLAYNQFTGAVSVNTTCNRQLKFVDISHNLLIGKLPSCIGSSSSNRAVNTSWNCLSYGDPKIQHTNSFCHKEAMAVKPAGTSSSEKAIEPSKKLGLMLGIIGGIVGLCGIVLLLILVIVRRRRIREHAEDKFDQYGAEKTSVRGSPLPNIEPRRVAQRMTNSALNLPPYRVFTLEEIEEATNNFDPSSLIKGGGAQEQLYKGRLSDNSLVLVRCIKLKQKHMPQALTQQMHQVLQDLRHRHLVSVLGHCIVTYQEHANYAGTTVFVATEHVSNSSLRDYLTDWRRKEMLKWPQRLAISINTARGVQFLHMGITPGIFGNKLKVENVELDTTLTAKISNYKIPFPFKMESENPSDQGQDVAGRKEDEEKEDIYEFGVILLQVITGKLITSASEVDELKHQVEKAITEGATKLRGIVDPNIQGSFAYDSLKTTVQITMNCLCTDSSKRPSIEDVLWNLQYSMQVQEGWTSSGNLSAQM 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8296659 8299791 + Conep13aG0100400.1 Cone13ag0974 451361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0974 738 Gene3D Ribonuclease Inhibitor 36 341 IPR032675 -
Cone13ag0974 738 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 36 208 - -
Cone13ag0974 738 SUPERFAMILY Protein kinase-like (PK-like) 424 718 IPR011009 -
Cone13ag0974 738 SUPERFAMILY L domain-like 58 328 - -
Cone13ag0974 738 Gene3D Phosphorylase Kinase; domain 1 417 519 - -
Cone13ag0974 738 ProSiteProfiles Protein kinase domain profile. 447 720 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0974 738 ProSiteProfiles Leucine-rich repeat profile. 141 162 IPR001611 GO:0005515(InterPro)
Cone13ag0974 738 Gene3D Transferase(Phosphotransferase) domain 1 533 731 - -
Cone13ag0974 738 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 346 723 IPR050647 -
Cone13ag0974 738 Pfam Leucine rich repeat 141 197 IPR001611 GO:0005515(InterPro)
Cone13ag0974 738 Pfam Protein kinase domain 454 715 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0974 738 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 533 734 - -
Cone13ag0974 738 SMART serkin_6 446 721 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0974 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0974 Cone-Chr13:8296659 Cone19ag0290 Cone-Chr19:2069814 1.48E-120 dispersed
Cone13ag0974 Cone-Chr13:8296659 Cone19ag0964 Cone-Chr19:7336213 1.84E-302 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g866 . . . . . Bpe10g00858 . Bma15g00250 . Cmo18g01192 . Cma18g01168 . Car18g01077 . Cpe09g00160 . Bhi07g01594 . . Lac13g0294 . . . Cla05g02463 Cam05g2650 Cec05g2685 Cco05g2719 Clacu05g2654 Cmu05g2506 Cre05g2622 Cone13ag0974 Cone19ag0964 . . Lsi04g00446 Csa05g02427 Chy10g00981 Cme10g00438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012316 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82039 PF08623 TIP120 5.90E-56 CL0020 Cone PK