Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0984 ATGGAATCTGCACAATCGGCTCTGATCGACCAATCGTTCAACGGTCAATACTCGCTCTGGATTCGAGAATCTCTCGACGTGCTGCCGGATAATTTCACCATCACTGATCCTAGCATATCAGGCCATCCAATCGTTTTCGCGAGCCGCGGATTCTTGAAGATGACGGGGTATTCGAAAGAGGAAGTGATTGGCAAAAACGGAAGGATGTTTCAGGGACCGAGAACGAACAGAAGATCGGTGATGGAAATTAGGGAGGCGATTAGGGAAGAGAGAGCGGTTCAGGTGAAACTGTTGAATTATAGAAAGGATGGGACGCCGTTTTGGATGGTTTTCCAGATGTGTCCTGTTTTCAGCAAGGAAGATGGGAGGGTGATTCATTTCATCGGAGTTCAGGTTCCGATTTTGAAGAAGCAGAGGACGAGGTCTTTGAATAGTGGATTTGGAAGAAATGGAGTTGGTTTGTGTGAGGAAGACAACTCCATGATAATGAGGGAGATTGTGTTTGGATCGTGCCGGAGAGAGGTTTTCTCGGATTCTTTACTCGAAGTAGGTCGGGTTTTGGATAGAGATTTAGTGTTGGATTCTGATAATAGAGGGATTGAAGAAACATGTGAAGCAAGTGAGTGTGAAAAGCAAAGAGCTGCAATCGCCATTAACAACGTCTTTTCGGTTCTAATCCAACACAGTGAGATGAAGGGAAAACCCGTGTGTGGCCAGAGATGCAGCTTACGTGGGGCCGGCTGCTTTCTCTCTTCCTCCTTGAATATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTGATCCTCACTTACCGGACTTTCCTATAGTTTATGCAAGTGACGCCTTTCTAAAATTAACAGGTTATACTAGACATGAAGTGTTGGGGCGAAATTGTAGATTCTTAAGTGGGGCCGATACAGATTTCTCGACCTTATTTCAGATAAAGGAAAGCATTAGAACTGAACAACCATGCACAGAAGGACAAGAGTTTGTTTTGGAATATTCTTCACATAGCACCCGTCCGAAATGCTTCCGGAAAGATAGCATACTTTGTGGGTATCCAGATAGATGA 1077 44.2 MESAQSALIDQSFNGQYSLWIRESLDVLPDNFTITDPSISGHPIVFASRGFLKMTGYSKEEVIGKNGRMFQGPRTNRRSVMEIREAIREERAVQVKLLNYRKDGTPFWMVFQMCPVFSKEDGRVIHFIGVQVPILKKQRTRSLNSGFGRNGVGLCEEDNSMIMREIVFGSCRREVFSDSLLEVGRVLDRDLVLDSDNRGIEETCEASECEKQRAAIAINNVFSVLIQHSEMKGKPVCGQRCSLRGAGCFLSSSLNISLGRIKQSFVLTDPHLPDFPIVYASDAFLKLTGYTRHEVLGRNCRFLSGADTDFSTLFQIKESIRTEQPCTEGQEFVLEYSSHSTRPKCFRKDSILCGYPDR 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8343150 8345876 + Conep13aG0101400.1 Cone13ag0984 451371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0984 358 SMART pac_2 94 137 IPR001610 -
Cone13ag0984 358 FunFam Protein TWIN LOV 1 isoform D 31 227 - -
Cone13ag0984 358 CDD PAS 273 347 IPR000014 -
Cone13ag0984 358 CDD PAS 44 134 IPR000014 -
Cone13ag0984 358 ProSiteProfiles PAS repeat profile. 277 299 IPR000014 -
Cone13ag0984 358 SMART pas_2 19 88 IPR000014 -
Cone13ag0984 358 SMART pas_2 252 325 IPR000014 -
Cone13ag0984 358 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 327 IPR035965 -
Cone13ag0984 358 PANTHER PROTEIN TWIN LOV 1 9 328 - GO:0005634(PANTHER)
Cone13ag0984 358 NCBIfam PAS domain S-box protein 44 130 IPR000014 -
Cone13ag0984 358 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 131 IPR035965 -
Cone13ag0984 358 Gene3D PAS domain 264 339 - -
Cone13ag0984 358 Gene3D PAS domain 31 152 - -
Cone13ag0984 358 Pfam PAS domain 273 326 IPR000014 -
Cone13ag0984 358 Pfam PAS domain 41 132 IPR000014 -
Cone13ag0984 358 ProSiteProfiles PAS repeat profile. 21 90 IPR000014 -
Cone13ag0984 358 ProSiteProfiles PAC domain profile. 91 146 IPR000700 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0984 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0984 Cone-Chr13:8343150 Cone5ag1195 Cone-Chr5:5398973 1.89E-41 dispersed
Cone13ag0984 Cone-Chr13:8343150 Cone19ag0974 Cone-Chr19:7385983 6.50E-216 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g848 . . . . . . . . Cmo04g01708 . . . . . . . Cpe01g01442 Bhi07g01608 . . . . . . . . . . . . . Cone13ag0984 Cone19ag0974 . . Lsi04g00459 Csa05g02417 Chy10g00974 Cme10g00448 . . . . . . . . . . . Cma04g01630 . Car04g01670 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013588 0 4 0 0 0 0 2 0 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 2 1 1 25