Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0985 ATGGAAGGGGAGGAGCACACGGATGAAGAAGGCAAACAAAAGCAAGAGATATGGAGTTGGGGAGCAGGGACAGAAGGGCAGCTTGGCACCACGATGCTTGAAGACGATCGTTTTCCTCAACTCCTCCACTTCCCTCCCCTCTCCTTCTCTTCCCCTCTATCTCTTCTCTCTTGCGGCGGCGCTCATGCTATCGCCTTGACTTTTGGTGGGAAGGTATTGACATGGGGAAGGGGAAGTTCAGGGCAGCTTGGCCATGGGGATTTGGAAAGAAGCTTGTTTCCGAAGCCTGTGATTGCTCTGGAAAGCTTCTTTATAACCCATGTTTCTGCTGGCTGGAATCACTCTGGCTTTGTTTCTGTGAAGGGAAACCTTTATACTTGTGGGGATGGTTCATTTGGTCAGCTTGGACATGGTGATTATAGGTCACTTTGCTCTCCTGTTAAAGTCGATTTCTTTGCTTGTAACCGTGTTCATGAAATTGCTTGCGGTATGCGCCATTCTCTTGCCTTGTTGAAAGAAGGTCAGGTTTATGGATTTGGGTCCGGAAAACGTGGTCAATTGGGCATCTCCAAGGCGACTAAATCAATTAATATTCCTACAATTACTTGTGGATTAGAAGATGTTGATATAGTAAGCATAGCTGCAAATGGAGATCATAGTGCTGCATTATCCGCCCATGGACATCTCTATACATGGGGAAGAGGTTTTGGCCGCAATTCGGATAGTCATTCCGCAAAGCCTTTACCTTCAGTTTCTTCATTCACAGAAGTTGCCCTGGGATGGAATCATGCCTTAGCCTTAACTGATAATGGGGACGTTTATATGCTTGGTGGAAATAGACACGGAGTCCTAAGTGATTCTGAAACTTCAAACGTCTCAAAGTACTTACCTGCCGGTTCAAATGAAAGTGCTCTAGACAGAGTTCCCGGTTTGGACAAGACAAAAGTTGTGTGTATAGCAGCTGGATCCGAGCATTCTGCTATAGTAACAGATGAAGGAGTTGTAAAAACGTGGGGTTGGGGCGAACACGGTCAGCTCGGCTTGGGCGATACTTGTGATCGGACCAGTCCTCAAGCAGTAGTTCTAGGCAGTGAATGTAATAATCCTTGGAAGAAAGATGGTGGTATTTTCAGTGTCTATTGTGGTAGTGGATTTACATTTGCCCTAAGAACACCTTCTTCTTCATAA 1188 45.88 MEGEEHTDEEGKQKQEIWSWGAGTEGQLGTTMLEDDRFPQLLHFPPLSFSSPLSLLSCGGAHAIALTFGGKVLTWGRGSSGQLGHGDLERSLFPKPVIALESFFITHVSAGWNHSGFVSVKGNLYTCGDGSFGQLGHGDYRSLCSPVKVDFFACNRVHEIACGMRHSLALLKEGQVYGFGSGKRGQLGISKATKSINIPTITCGLEDVDIVSIAANGDHSAALSAHGHLYTWGRGFGRNSDSHSAKPLPSVSSFTEVALGWNHALALTDNGDVYMLGGNRHGVLSDSETSNVSKYLPAGSNESALDRVPGLDKTKVVCIAAGSEHSAIVTDEGVVKTWGWGEHGQLGLGDTCDRTSPQAVVLGSECNNPWKKDGGIFSVYCGSGFTFALRTPSSS 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8347458 8349434 + Conep13aG0101500.1 Cone13ag0985 451372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0985 395 SUPERFAMILY RCC1/BLIP-II 13 392 IPR009091 -
Cone13ag0985 395 PRINTS Chromosome condensation regulator RCC1 signature 16 32 IPR000408 -
Cone13ag0985 395 PRINTS Chromosome condensation regulator RCC1 signature 72 88 IPR000408 -
Cone13ag0985 395 PRINTS Chromosome condensation regulator RCC1 signature 328 349 IPR000408 -
Cone13ag0985 395 PRINTS Chromosome condensation regulator RCC1 signature 160 176 IPR000408 -
Cone13ag0985 395 PRINTS Chromosome condensation regulator RCC1 signature 53 66 IPR000408 -
Cone13ag0985 395 PRINTS Chromosome condensation regulator RCC1 signature 176 190 IPR000408 -
Cone13ag0985 395 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 122 173 IPR000408 -
Cone13ag0985 395 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 174 226 IPR000408 -
Cone13ag0985 395 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 70 121 IPR000408 -
Cone13ag0985 395 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 15 69 IPR000408 -
Cone13ag0985 395 Pfam Regulator of chromosome condensation (RCC1) repeat 255 282 - -
Cone13ag0985 395 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 56 393 IPR051210 -
Cone13ag0985 395 Gene3D - 10 299 IPR009091 -
Cone13ag0985 395 Gene3D - 300 394 IPR009091 -
Cone13ag0985 395 Pfam Regulator of chromosome condensation (RCC1) repeat 173 223 IPR000408 -
Cone13ag0985 395 Pfam Regulator of chromosome condensation (RCC1) repeat 121 170 IPR000408 -
Cone13ag0985 395 Pfam Regulator of chromosome condensation (RCC1) repeat 70 117 IPR000408 -
Cone13ag0985 395 Pfam Regulator of chromosome condensation (RCC1) repeat 333 389 IPR000408 -
Cone13ag0985 395 Pfam Regulator of chromosome condensation (RCC1) repeat 16 66 IPR000408 -
Cone13ag0985 395 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 227 270 IPR000408 -
Cone13ag0985 395 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 160 170 IPR000408 -
Cone13ag0985 395 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 332 IPR000408 -
Cone13ag0985 395 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 392 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0985 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0985 Cone-Chr13:8347458 Cone6ag1247 Cone-Chr6:9942555 1.12E-32 dispersed
Cone13ag0985 Cone-Chr13:8347458 Cone18ag0070 Cone-Chr18:384412 2.10E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34