Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0987 ATGGCGCTTACACTCCAACCCCACGCACCTCCGCGCGCCGCCCCAATTCCCAACCCACCCACCACCTCAATTACCAATCAACCACACCTCCTCCGGTTATTAACCAACTGTTCAACCCTTTCCCATTTAAAACAAATTCACGCTCACACGCTTCGAACCCAATCAGACCATAACTCCCACCCCTTCTTTCTCTACAGCAAGATTCTCCAATTCGCATCTATCACTGACCTCGACTATGCTTATCGAGTTTTCGATCAGATCCAGAACCCAAATTCGTTCACGTGGAACACGCTTATCGGAGCCTCTGCTCGGAGCTCCGACCGAAAATCTCAGGCTATATTGCTTTACTACAATATGGTATGTGAGGGGCTTGTTGCACCGGATAAATATACGTTTCCTTTTCTTCTTAAAGCTTGCGCTTATTTATTCGCTTTGTCGGAAGGAAAACAAGCACATGCGCACGTCATAAAACTAGGGTTGGATCCTGATGTTTATGTTAACAACAGCTTGATTCATTTCTACAGTTCTTGTGGGTGTTTAGAACCTGCTCGTAAGGTGTTTGACGAAATGACACAGAGAAGTCTGGTTTCATGGAACGTTATGATTGATGCGCTTGTTCAATTTGGAGAGTATGAAAATGCTCTCAAGCTGTTTGTCGAATTGCAGAGTGTTCATGATCCTGATGGGTATACAATTCAGAGTGCTATAAATGCTTGTGCTGGTTTAGGTGCTTTATCTTTAGGCATATGGGTTCATGTTTATTTGTTGAGAAATAACAGTTGTGCCATAGATAATAATATTTTGTTGAATTCTTCATTGGTGGATATGTATTGCAAATGTGGGTCTTTGGAACTGGCCAACCAACTGTTCGAAAAAATGCCAGAAAGAGATTTAAACACATGGAATTCAATGATTTTAGGTCTTTCTAATCACGGCCAAGCTAACACTGTTTTTGAACGCTTTACTCGGTTAGTCGAAATGGAGAAGCTCAAGCCTAATTCAATCACTTTTGTCGGAATTCTCAATGCATGCAATCATACAGGCATGGTTTCTGAGGGCCGGAAATATTTCAGTATGATGATTAATGATTACAATATTGAACCCCAAATCGAGCACTATGGATGCTTAGTTGATCTGCTTGCTCGGTCTGGTTTCATTCATGAAGCATTAGACTTGGTTTCAAACATGCCTATAAAACCTGATCCAGTTATCTATAGGAGTCTTCTGGATGCGTTTTGCAAGACGAACCCAGACGTGAAGTTAAGCGAAGAAATTGCTCTTCAAATTCTTCAAACCGAAATGGGTACATTAGATAGTGGGGTATATGTCTTATTATCAAGAGTTTATGCGTTGGCTAATAAATGGAATAGTGTTGGACTGATCCGTATACTAATGAACGATGAAGGGGCTGTAAAAGAACCCGGATGTAGTTTGATTGAGATAGATGGAATTAGCCACGAGTTTATTGCAGGGGACACATCTCATCCTCAGAGTAAGGAAATCTATGAAGTTGTTGATTTGATTGAAGAGAAGCTTGAGAGGATTGGGTATAAGGTTGACTATACACAGGCAGCTATATTGGTTGATGGGGATAATATTGTGGTGAAACGACGCTCACTTCGGGTTCATAGTGAGAGATTGGCTATTGCTCTTGGGTTGTTGAAATTGAAACGCAGAATCCCGATCCGGGTTTTTAAAAACCTTAGGGTTTGTAATGATTGTCATGAGGTGGTTAAATTGATTTCAAGCATGTTTGAGGTCGAGATTATAATGAGGGATCGGTCTCGATTCCATTGTTTTAAGGATGGAATTTGCTCCTGCAATGACTTTTGGTGA 1836 41.23 MALTLQPHAPPRAAPIPNPPTTSITNQPHLLRLLTNCSTLSHLKQIHAHTLRTQSDHNSHPFFLYSKILQFASITDLDYAYRVFDQIQNPNSFTWNTLIGASARSSDRKSQAILLYYNMVCEGLVAPDKYTFPFLLKACAYLFALSEGKQAHAHVIKLGLDPDVYVNNSLIHFYSSCGCLEPARKVFDEMTQRSLVSWNVMIDALVQFGEYENALKLFVELQSVHDPDGYTIQSAINACAGLGALSLGIWVHVYLLRNNSCAIDNNILLNSSLVDMYCKCGSLELANQLFEKMPERDLNTWNSMILGLSNHGQANTVFERFTRLVEMEKLKPNSITFVGILNACNHTGMVSEGRKYFSMMINDYNIEPQIEHYGCLVDLLARSGFIHEALDLVSNMPIKPDPVIYRSLLDAFCKTNPDVKLSEEIALQILQTEMGTLDSGVYVLLSRVYALANKWNSVGLIRILMNDEGAVKEPGCSLIEIDGISHEFIAGDTSHPQSKEIYEVVDLIEEKLERIGYKVDYTQAAILVDGDNIVVKRRSLRVHSERLAIALGLLKLKRRIPIRVFKNLRVCNDCHEVVKLISSMFEVEIIMRDRSRFHCFKDGICSCNDFW 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8354775 8356790 + Conep13aG0101700.1 Cone13ag0987 451374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0987 611 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 26 132 IPR050421 -
Cone13ag0987 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Cone13ag0987 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Cone13ag0987 611 FunFam Pentatricopeptide repeat-containing protein At5g66520 30 191 - -
Cone13ag0987 611 Pfam PPR repeat 372 396 IPR002885 -
Cone13ag0987 611 Pfam PPR repeat 271 297 IPR002885 -
Cone13ag0987 611 Pfam PPR repeat 196 222 IPR002885 -
Cone13ag0987 611 Pfam PPR repeat 300 325 IPR002885 -
Cone13ag0987 611 Pfam PPR repeat 336 362 IPR002885 -
Cone13ag0987 611 Pfam PPR repeat 168 193 IPR002885 -
Cone13ag0987 611 NCBIfam pentatricopeptide repeat 196 223 IPR002885 -
Cone13ag0987 611 NCBIfam pentatricopeptide repeat 272 297 IPR002885 -
Cone13ag0987 611 MobiDBLite consensus disorder prediction 1 22 - -
Cone13ag0987 611 Pfam E+ motif 486 504 IPR046849 -
Cone13ag0987 611 Gene3D Tetratricopeptide repeat domain 271 482 IPR011990 GO:0005515(InterPro)
Cone13ag0987 611 FunFam Pentatricopeptide repeat protein PPR986-12 271 487 - -
Cone13ag0987 611 Pfam E motif 424 480 IPR046848 -
Cone13ag0987 611 Gene3D Tetratricopeptide repeat domain 143 246 IPR011990 GO:0005515(InterPro)
Cone13ag0987 611 Gene3D Tetratricopeptide repeat domain 26 142 IPR011990 GO:0005515(InterPro)
Cone13ag0987 611 Pfam DYW family of nucleic acid deaminases 522 611 IPR032867 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0987 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0987 Cone-Chr13:8354775 Cone1ag1198 Cone-Chr1:55878562 9.94E-153 dispersed
Cone18ag1475 Cone-Chr18:9842117 Cone13ag0987 Cone-Chr13:8354775 1.70E-62 dispersed
Cone12ag0834 Cone-Chr12:7529176 Cone13ag0987 Cone-Chr13:8354775 4.28E-75 transposed
Cone19ag0980 Cone-Chr19:7406670 Cone13ag0987 Cone-Chr13:8354775 3.46E-136 transposed
Cone13ag0987 Cone-Chr13:8354775 Cone19ag0979 Cone-Chr19:7406194 3.40E-55 wgd
Cone13ag0987 Cone-Chr13:8354775 Cone2ag0171 Cone-Chr2:904760 2.29E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g836 . . . . . . Bma14g01744 . Cmo04g01697 . . . . . . . Cpe01g01432 Bhi07g01635 . . . . . . Cla05g02489 . . . . . . Cone13ag0987 . . . Lsi04g00486 . Chy10g00959 Cme10g00466 . Blo11g00874 . . . . . . . . . Cma04g01619 . Car04g01661 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012298 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 0 0 1 1 1 1 1 1 1 27