Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0995 | ATGGATCCAGGTGCGTTGATGAACGAAGGATCGTTTTCGAACGTGAATGTAAATTTGTCGTCGTTTAATCTGCCTGAGATCTGGCAGTTACCGATGAACGGTGGCGGTGGCGGTTCTTTCGAGGAACCTGCAGGTGGATTGGGCCTCAGGATGGCCCGATTCGAACACAATTTGGGCCTGCTAGCCGACCTTTCCGGTCCGAATCGAGAAGCTGTGGCCAATGATCCAATGAGCTTGGAACAGAAAATAGGCCATTGCAGAGCCAAGAGGCAGTTTGATGTAGTAGACGAGTCAGGCAATGGCGTCTCCACCACTTGCAGCGGCAATGGCGTGAACCAATGCGATGGAAAACGGCTAAAAACATCAACATGTAGAGATGAGAATCGCGAATCTAAAACAGAAGCAGAACCGAGCTCAGGAAAGTCAGGGGAACAAAATGCTCAGCTACCGCCTGAACCACCTAAGCAAGATTACATCCATGTTCGAGCAAGAAGGGGTCAAGCAACTGATAGCCACAGCTTAGCCGAAAGAGCTAGAAGAGAAAAGATTAGTGAGAGGATGAAGATTCTTCAGGATCTGGTTCCTGGCTGTAATAAGGTTATAGGGAAAGCGGTCGTTCTTGACGAGATAATCAATTACATCCAATCGCTACAGCATCAGGTCGAGTTTCTGTCGATGAAGATTGAAGCAGTTAATTCCAGAATATGCCCTACCGTTGACGCATTTCCCTCTAAAGATGTAAGTCATAACTCTTATCACTTATCAAATCGATCTTATTCATTGATCTTGTGTGCATACTTTTTTTGTAATATCAAAATTTCAAATAAATTCGAAATTTCAGTTCGATCGACAAACATATGCGACAAATGGTATGGCTTTTGGCTCACTAGGAACCAGAGAGTATAG | 906 | 44.92 | MDPGALMNEGSFSNVNVNLSSFNLPEIWQLPMNGGGGGSFEEPAGGLGLRMARFEHNLGLLADLSGPNREAVANDPMSLEQKIGHCRAKRQFDVVDESGNGVSTTCSGNGVNQCDGKRLKTSTCRDENRESKTEAEPSSGKSGEQNAQLPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAVVLDEIINYIQSLQHQVEFLSMKIEAVNSRICPTVDAFPSKDVSHNSYHLSNRSYSLILCAYFFCNIKISNKFEISVRSTNICDKWYGFWLTRNQRV | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8388473 | 8390698 | + | Conep13aG0102600.1 | Cone13ag0995 | 451382 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0995 | 301 | MobiDBLite | consensus disorder prediction | 117 | 155 | - | - | |
Cone13ag0995 | 301 | MobiDBLite | consensus disorder prediction | 119 | 137 | - | - | |
Cone13ag0995 | 301 | FunFam | Basic helix-loop-helix transcription factor | 164 | 236 | - | - | |
Cone13ag0995 | 301 | Coils | Coil | 214 | 234 | - | - | |
Cone13ag0995 | 301 | Gene3D | - | 164 | 237 | IPR036638 | GO:0046983(InterPro) | |
Cone13ag0995 | 301 | Pfam | Helix-loop-helix DNA-binding domain | 171 | 218 | IPR011598 | GO:0046983(InterPro) | |
Cone13ag0995 | 301 | CDD | bHLH_AtBPE_like | 157 | 242 | - | - | |
Cone13ag0995 | 301 | SMART | finulus | 173 | 223 | IPR011598 | GO:0046983(InterPro) | |
Cone13ag0995 | 301 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 165 | 235 | IPR036638 | GO:0046983(InterPro) | |
Cone13ag0995 | 301 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 167 | 217 | IPR011598 | GO:0046983(InterPro) | |
Cone13ag0995 | 301 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 103 | 242 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0995 | Cone-Chr13:8388473 | Cone20ag0245 | Cone-Chr20:1087174 | 2.21E-43 | dispersed | |
Cone13ag0099 | Cone-Chr13:612715 | Cone13ag0995 | Cone-Chr13:8388473 | 1.08E-62 | wgd | |
Cone13ag0995 | Cone-Chr13:8388473 | Cone19ag0986 | Cone-Chr19:7438204 | 7.12E-152 | wgd | |
Cone13ag0995 | Cone-Chr13:8388473 | Cone19ag0102 | Cone-Chr19:583082 | 6.19E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44653 | PF03167 | UDG | 8.60E-23 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0995 | - | - | - | 0.0 |