Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0995 ATGGATCCAGGTGCGTTGATGAACGAAGGATCGTTTTCGAACGTGAATGTAAATTTGTCGTCGTTTAATCTGCCTGAGATCTGGCAGTTACCGATGAACGGTGGCGGTGGCGGTTCTTTCGAGGAACCTGCAGGTGGATTGGGCCTCAGGATGGCCCGATTCGAACACAATTTGGGCCTGCTAGCCGACCTTTCCGGTCCGAATCGAGAAGCTGTGGCCAATGATCCAATGAGCTTGGAACAGAAAATAGGCCATTGCAGAGCCAAGAGGCAGTTTGATGTAGTAGACGAGTCAGGCAATGGCGTCTCCACCACTTGCAGCGGCAATGGCGTGAACCAATGCGATGGAAAACGGCTAAAAACATCAACATGTAGAGATGAGAATCGCGAATCTAAAACAGAAGCAGAACCGAGCTCAGGAAAGTCAGGGGAACAAAATGCTCAGCTACCGCCTGAACCACCTAAGCAAGATTACATCCATGTTCGAGCAAGAAGGGGTCAAGCAACTGATAGCCACAGCTTAGCCGAAAGAGCTAGAAGAGAAAAGATTAGTGAGAGGATGAAGATTCTTCAGGATCTGGTTCCTGGCTGTAATAAGGTTATAGGGAAAGCGGTCGTTCTTGACGAGATAATCAATTACATCCAATCGCTACAGCATCAGGTCGAGTTTCTGTCGATGAAGATTGAAGCAGTTAATTCCAGAATATGCCCTACCGTTGACGCATTTCCCTCTAAAGATGTAAGTCATAACTCTTATCACTTATCAAATCGATCTTATTCATTGATCTTGTGTGCATACTTTTTTTGTAATATCAAAATTTCAAATAAATTCGAAATTTCAGTTCGATCGACAAACATATGCGACAAATGGTATGGCTTTTGGCTCACTAGGAACCAGAGAGTATAG 906 44.92 MDPGALMNEGSFSNVNVNLSSFNLPEIWQLPMNGGGGGSFEEPAGGLGLRMARFEHNLGLLADLSGPNREAVANDPMSLEQKIGHCRAKRQFDVVDESGNGVSTTCSGNGVNQCDGKRLKTSTCRDENRESKTEAEPSSGKSGEQNAQLPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAVVLDEIINYIQSLQHQVEFLSMKIEAVNSRICPTVDAFPSKDVSHNSYHLSNRSYSLILCAYFFCNIKISNKFEISVRSTNICDKWYGFWLTRNQRV 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8388473 8390698 + Conep13aG0102600.1 Cone13ag0995 451382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0995 301 MobiDBLite consensus disorder prediction 117 155 - -
Cone13ag0995 301 MobiDBLite consensus disorder prediction 119 137 - -
Cone13ag0995 301 FunFam Basic helix-loop-helix transcription factor 164 236 - -
Cone13ag0995 301 Coils Coil 214 234 - -
Cone13ag0995 301 Gene3D - 164 237 IPR036638 GO:0046983(InterPro)
Cone13ag0995 301 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983(InterPro)
Cone13ag0995 301 CDD bHLH_AtBPE_like 157 242 - -
Cone13ag0995 301 SMART finulus 173 223 IPR011598 GO:0046983(InterPro)
Cone13ag0995 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 235 IPR036638 GO:0046983(InterPro)
Cone13ag0995 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 217 IPR011598 GO:0046983(InterPro)
Cone13ag0995 301 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 242 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0995 Cone-Chr13:8388473 Cone20ag0245 Cone-Chr20:1087174 2.21E-43 dispersed
Cone13ag0099 Cone-Chr13:612715 Cone13ag0995 Cone-Chr13:8388473 1.08E-62 wgd
Cone13ag0995 Cone-Chr13:8388473 Cone19ag0986 Cone-Chr19:7438204 7.12E-152 wgd
Cone13ag0995 Cone-Chr13:8388473 Cone19ag0102 Cone-Chr19:583082 6.19E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44653 PF03167 UDG 8.60E-23 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0995 - - - 0.0