Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1001 ATGTACAGGAATTTCTCACTCCATCGTCTTCTTCTTCTTCTCCTCGCCACGCACTTTCTAATCGGCGAGACTGAAGGCATAGGGAGAGGATTTAGGCTTCGAAATCTGTTGAGTTTCATAGAGGATCCACGAGGAACTAACGTTACATTTGAATGCTCTCCTTCTGGCCCCTGTGTCTCCTGCCTCTACTCTGAAAAGAATGATGAAAAATATCGCTGCAGTGAGACTGGCTATCGTATCCCTCTCAAATGTGTGGAAATCAAAGACAGCTCAAAAGTTTCTAACGGAAAGAGGTCTGAAAAGGGTCGATCTACTCTGGAAATGGCTCACGATAGTGCAGATAATGGAGAATCGATTCCCATGCTGACTGATGAAAGAAGATTCACTACATCAATAACAGAAAGAAAACTACTGGGCGATTCATCCTCCTTGGAAGGAAGTTCACAGACATACATTACTTACAGAAGCTGCATTCCACCAGTTAATGAAGAGAAATTGTCAGTTTTTGGTTTTGAGCTTATCGTGCTAGCTCTTTTACTTGTTTGTGGCTCATTTGTGTATTTAAGGAGGAAGCAGACTGCTTCCACACCTGGTTTTGCATCTGGGAGGATACCCGCAAATTCCAGGTTTTAG 633 43.13 MYRNFSLHRLLLLLLATHFLIGETEGIGRGFRLRNLLSFIEDPRGTNVTFECSPSGPCVSCLYSEKNDEKYRCSETGYRIPLKCVEIKDSSKVSNGKRSEKGRSTLEMAHDSADNGESIPMLTDERRFTTSITERKLLGDSSSLEGSSQTYITYRSCIPPVNEEKLSVFGFELIVLALLLVCGSFVYLRRKQTASTPGFASGRIPANSRF 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8417835 8420185 - Conep13aG0103200.1 Cone13ag1001 451388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1001 210 MobiDBLite consensus disorder prediction 94 110 - -
Cone13ag1001 210 MobiDBLite consensus disorder prediction 94 119 - -
Cone13ag1001 210 PANTHER OS09G0560400 PROTEIN 23 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1001 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0994 Cone-Chr19:7466080 Cone13ag1001 Cone-Chr13:8417835 6.15E-49 transposed
Cone13ag1001 Cone-Chr13:8417835 Cone19ag0993 Cone-Chr19:7465602 1.50E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g808 . . . . . Bpe10g00815 . Bma15g00209 Cmo04g01687 . . . . . Sed06g1590 . Cpe01g01423 Bhi07g01650 Tan04g1155 Cmetu10g0001 Lac13g0252 Hepe10g1690 . . Cla05g02499 Cam05g2683 Cec05g2716 Cco05g2751 Clacu05g2686 Cmu05g2540 Cre05g2655 Cone13ag1001 Cone19ag0993 . . Lsi04g00499 Csa05g02386 . Cme10g00476 Blo06g00857 . . . . . . . . . . Cma04g01609 . Car04g01651 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007688 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 36