Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1003 ATGAAGATATTTAGCATATTCTCAGCTTTTGTTGTTATAGCTTTCTACTTCTTCTGCGTCTCTGCACAAGACGATGTAACGTGCCTCGAAGGCGTCAAGAAATCGCTCTCGGACCCTCTCGGAAAACTCAGCTCATGGACGTTTTCTAACTCTTCCGATACAATCTGCAAGTATGAAGGTGCTTCTTGCTGGAACGCGAAGGAGAATCGTCTCATCAGCCTTCAGCTTCCGTCTATACAGCTCTCCGGCCATTTGCCGGAGTCTCTCCAGTACTGCCGGAGCCTTCAGACGTTAGATCTCTCTAGAAACGAACTCTCGGGCTCTATTCCTTCACAAATCTGTACCTGGTTGCCTTATTTAGTAGCCCTAGATCTTTCCGGTAACCAACTCACTGGTTCGATCCCGGCGGAGATTGTAAACTGTAAGTTCTTGAACAATCTTCTTCTGGACGACAACCAGTTGTCCGGAACAATACCTTACCATCTTGGTCAGCTCGATCGTTTGAAGCGATTGTCCCTCGCGAATAACGATCTTACAGGTTCGATACCTTCCGATTTATCGAAGTTTAATAAAACCGATTTCGATGGAAATGGCGGACTCTGTGGACAACCTCTTGGTTCAATATGTGGTGGATTGAGCTCCAAGAGCCTCGCCACCATCATCGCCGCCGGAGTTGTCGGTGCAGCAGCTTCTCTTCTTCTCGGTTTTGCGCTCTGGTGGTGGTTTCACGTGAAGGCACGTGAGAACAGGAGTAAGTTAAGCGGCAGTCATGGTGGAGGTGGTAAAGATAATACTAGTTGGGTCGAGTTGTTGAAATCGCACAAGCTTGTTCAGGTCTCTTTGTTTCAGAAACCTATAGTGAAAGTCAAATTATCTGATCTCTTAGATGCTACTAACATTTTTTATTCTGCAAGCATAGTGAGCTCAACAAAAACAGGAGTATCATACAAGGCAGTTCTATCTGATGGTTCTGCTCTCTCAGTGAAGAGGCTTATTTCCTGTAAGCTTACTGAGAAGCAGTTCCGGTCAGAGATGAACAGGTTAGGACAGCTTAGGCATCCGAATTTGGTGCCATTATTAGGGTACTGTATTGTGGAAGATGAAAAGCTTTTGGTTTACAAGCATATGTACAATGGCACATTGTACTCGCAATTGCATAGAGATGCTAATACTAGAGATGGTTTTCTGGACTGGTCAACTAGGCTTAAGATTGGACAAGGTGTGGCGGGTGGGCTTTCATGGCTTCACCATGGTTGTAATCCTCCATATATGCACCAAAGCATTAGCTCAAATGTGATTCTTCTTGATGATGATTTTGATGCAAGGGTGACTGATTTTGGCATGGCTAGACTTATGGGTTCTCGTGATTCTAATGATAGTTCATTTGTGAATGGTGATTTGGGCGAATTCGGGTATATTGCGTCTGAATATTCTAGCACAATGGTTGCTTCCTTTAAAGGGGATGTTTATGCTTTTGGAATTGTGCTTTTGGAATTGGTTACTGGGCAGAAACCAACTGAAGTTGGTAATGTTGAGGAGGGTTTTAAAGGTAATTTGGCTGATTGGGTTAATTGGTTGTCAAAAAATGGTCGACGTAGTGATGCTATTGATAAGATTTTATGTGGGAAAGGCGCTGATGACGAGATTATGGAGTTTCTGAAGGTTGCTTGTAGTTGTGTGGTTTCTGGGCCTAAGGATAGGCCTTCTATGAACCAAGTTTGTGAATCATTGAAGAACTTGGCCGTGAAGTATGGTTTCTCTGAATAA 1767 43.8 MKIFSIFSAFVVIAFYFFCVSAQDDVTCLEGVKKSLSDPLGKLSSWTFSNSSDTICKYEGASCWNAKENRLISLQLPSIQLSGHLPESLQYCRSLQTLDLSRNELSGSIPSQICTWLPYLVALDLSGNQLTGSIPAEIVNCKFLNNLLLDDNQLSGTIPYHLGQLDRLKRLSLANNDLTGSIPSDLSKFNKTDFDGNGGLCGQPLGSICGGLSSKSLATIIAAGVVGAAASLLLGFALWWWFHVKARENRSKLSGSHGGGGKDNTSWVELLKSHKLVQVSLFQKPIVKVKLSDLLDATNIFYSASIVSSTKTGVSYKAVLSDGSALSVKRLISCKLTEKQFRSEMNRLGQLRHPNLVPLLGYCIVEDEKLLVYKHMYNGTLYSQLHRDANTRDGFLDWSTRLKIGQGVAGGLSWLHHGCNPPYMHQSISSNVILLDDDFDARVTDFGMARLMGSRDSNDSSFVNGDLGEFGYIASEYSSTMVASFKGDVYAFGIVLLELVTGQKPTEVGNVEEGFKGNLADWVNWLSKNGRRSDAIDKILCGKGADDEIMEFLKVACSCVVSGPKDRPSMNQVCESLKNLAVKYGFSE 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8424072 8426481 - Conep13aG0103400.1 Cone13ag1003 451390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1003 588 PRINTS Leucine-rich repeat signature 117 130 - -
Cone13ag1003 588 PRINTS Leucine-rich repeat signature 95 108 - -
Cone13ag1003 588 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 22 210 - -
Cone13ag1003 588 SUPERFAMILY Protein kinase-like (PK-like) 278 577 IPR011009 -
Cone13ag1003 588 Pfam Leucine rich repeat N-terminal domain 23 64 IPR013210 -
Cone13ag1003 588 Gene3D Transferase(Phosphotransferase) domain 1 376 585 - -
Cone13ag1003 588 Gene3D Phosphorylase Kinase; domain 1 261 375 - -
Cone13ag1003 588 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515(InterPro)
Cone13ag1003 588 Pfam Leucine Rich Repeat 167 188 IPR001611 GO:0005515(InterPro)
Cone13ag1003 588 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515(InterPro)
Cone13ag1003 588 Gene3D Ribonuclease Inhibitor 22 211 IPR032675 -
Cone13ag1003 588 SUPERFAMILY L domain-like 20 209 - -
Cone13ag1003 588 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 375 - -
Cone13ag1003 588 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 68 579 IPR051564 GO:0016020(PANTHER)
Cone13ag1003 588 Pfam Protein tyrosine and serine/threonine kinase 327 577 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1003 588 ProSiteProfiles Protein kinase domain profile. 301 580 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1003 Cone-Chr13:8424072 Cone18ag1340 Cone-Chr18:9262250 3.83E-221 dispersed
Cone11ag0141 Cone-Chr11:632792 Cone13ag1003 Cone-Chr13:8424072 8.14E-221 wgd
Cone13ag1003 Cone-Chr13:8424072 Cone16ag0887 Cone-Chr16:9226861 2.63E-203 wgd
Cone13ag1003 Cone-Chr13:8424072 Cone19ag0996 Cone-Chr19:7471069 0 wgd
Cone13ag1003 Cone-Chr13:8424072 Cone2ag0165 Cone-Chr2:885313 6.42E-210 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82041 PF00248 Aldo_ket_red 6.30E-49 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1003 - - - 0.0