Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1006 ATGGAAAAAATAATGTCTCCCGCCATGAACACACTCACTGATTTCTTATCCCAACGGATCAGTACCTCCTCGCAGCTCTCCTTCTCTTCTTCGACATTCAAATCTAATCTCTCTCTTCAACCTCACTCTGCCACTGAAATCCTAGGGTTTTGTTTCCCGAAATCTCTTCGCACTCCCTCTCCGATTTCGCTCCGATACAGAGTCTGCTTCGAGTCGCCGAGGTCAGTTTCTCACTTGAAATCTCACTTCTCCGATGCTGACGATGACGAAGACGACTATGACGACGAGGATGTGGCTGCTGAAGAGTATGAGGATGTTTCTGCCGATCTATCGGAGGAAGTTGATCAGAGCGACAATGAAGAAGACGAATTATCAATGGAAGCTGCGGAGGAGACTTCTGCTCTGCGCGAGGAGCTGAAGTGGCAGAGAGTGGAAAATCTGGTCAAGGAAGTCAGAGAATTCGGCGGGGAAATCGACGATGTTGATGAACTCGCTTCTATTTACAATTTCCGGATCGATAAATTTCAGCGATTGGCTATAAAAGCATTCTTGAGAGGATCCTCGGTGGTGGTATCAGCGCCAACAAGCAGTGGGAAGACTTTAATTGCAGAAGCAGCTGCTGTTGCCACAGTAGCCAGGAAAAAGCGATTGTTCTACACTACTCCACTTAAGGCATTGTCTAATCAGAAGTTTTATGAATTTCGTGAGACATTTGGAGACAGCTATGTTGGACTTCTTACAGGAGATTCTGCAGTTAATAAAGATGCTCCTATTCTAATTATGACCACTGAAATTTTGCGGAACATGTTGTATCAGAGTGTTGGGATGACTTCTTCTGGAACTGGACTTTTCAATGTAGATGTGATAGTCTTGGATGAAGTTCATTATCTTAGCGATATATCTCGGGGTACAGTGTGGGAAGAGATTGTCATTTATTGCCCCAAAGAAGTCCAGCTTATATGTCTATCAGCAACTGTTGCAAATCCAGAAGAATTGGCTGGCTGGATTGGTCAGATTCATGGTAAAACAGAGTTGGTAACAACATCTAAGCGTCCAGTTCCACTGACTTGGCATTTCTCCACAAAGAACTCTTTGTTACCTCTTCTTGATGAGAATGGAACTCACATGAACAGGCATTTCTCTATCTTTGTACCTTCCCCCTCCCCCTCTCAAACCTTAACATCTTTCATGTTTCCTTTTGTTATAAATTGGAGCAGGAAGCTATCACTCAATTATCTACAACTTCAAGCTCCAGGAGTTAGATCTTACAAGGATGATGGCTCAAGAAGAAGGAATTCAAGAAGACGAGCAAATGATATGGACTATGACAGTAACAATAGCATGTCTAGACAGAGAAGTTCTTCTCTTTCAAAGAATGACATAAATGCAATACGTCGTTCACAAGTTCCTCAAGTGACTGATACCTTATGGCACCTTAAAAGTAGGGATATGCTGCCAGCAATTTGGTTTATCTTTAGCAGGAAAGGATGTGATGCAGCTGTTCAGTATGTTGATGGCTCTAACCTCTTAGACGAGTGTGAGATCAGTGAGGTTGAACTCGCCTTAAAAAAATTTCGCACTCTCTATCCAGATGCTGTTCGAGAGTCAGCCATAAAAGGACTTCTCCAAGGAGTTGCTGCCCATCATGCTGGATGTCTACCATTATGGAAGTCATTCATAGAACAGCTGTTTCAAAGAGGACTTGTTAAAGTTGTCTTTGCTACAGAAACACTAGCTGCTGGAATAAACATGCCTGCCAGGACATCAATTATTGCATCCCTGAGCAAACGAACTGATAGTGGTCGTATCCAATTAAGCTCCAATGAATTGCTTCAAATGGCTGGTCGGGCTGGACGTAGGGGAACTGATAAAAGAGGTCATGTAGTGATTATTCAAACACCTTTTGAAGGTGCTGAAGAATGCTGCAAGCTTCTGTTTGCTGGAGTAGAACCTCTAGTTTCACAGTTTACTGCTTCCTATGGAATGGTGCTCAATCTTCTTGCAGGTGCAAAGGTTACTAATAGAATAAATGAAGAAGATGAGGAAAAATCCCGACTAGCTAAGCGAACTGTGGAAGAAGCTAGGAAGTTAATTGAGAAAAGTTTTGGAAACTATGTGAGCAGCAGTGTTATGGTTGCAGCACAAGAGGAACTTGCCAAATTACAGAAAGAGATTGAGATGCTGACATCTGAGTTAACTGATGAAGCCATTGACAGAAGGAGCAGACAAATTTTGTCTGGGAAGGCATATAAGGAGATTTCAGATCTTCAGGAGGAGCTAAGAGAAGAGAAAAGGGTAAGGACAGAACTGCGGAGAAAGATGGAATCAGAGAGACGCTCTGCTCTGAAATCTCTACTGAGGGAGTTTGAAAATGGACAATTACCTTTTCTGTGTTTACAGTATAAAGATACTGAAGGTGTTCAACACTTGATTCCGGCTGTTTACTTGGGGAACATGGACTCATTGAATGAAACAAAACTAAGGAACCTTGTTTCTGTTGAAAATTCTTCTTCTTTAAATGTGGTAAATTCAGAAACAAGCCTTGATGGACCCAAAATGAACCCAGAAGTTGAATCCTCGTACTATGTGGCTTTAGGTTCAGACAATTCTTGGTACCTCTTTACAGAGAAGTGGATTAAAACGGTTTATAAAACCGGGTTTCCTAACCTTGCCTTGGCTCAAGGTGATGCTCTGCCACGAGAAATTATGAGAAGGCTTCTAGATAAGGAGGATATGAAGTGGGATAAGCTCTCTGATTCTGAACTTGGCGGGATATGGTCCATGGAAGGATCTCTCGAGACATGGTCATGGAGTTTAAATGTTCCCGTTTTGAATAGTCTCTCAGGAGATGATGAACTATTACAAATGTCACAGACATATCTTGAATCTCTAGAACATTACAAGGAACAAAGAAATAAAGTTGCACGTTTGAAGAAAAATATTGTACGGACAGAGGGGTTCAGGGAGTATAAGAGGATTATTGACATGACCAAGATCACTCAAGACAAGATCAGACGGTTAAGGGCAAGATCCAAACGTCTCACCAACCGAATAGAGCAAATTGAGCCATCTGGGTGGAAAGAGTTCTTACAGATCAGCAATGTCATACATGAAATTAGGGCACTAGATATTAATACCCACTTAATATTTCCATTAGGTGAAACTGCTGCAGCAATTCGTGGAGAAAATGAACTTTGGCTTGCAATGGTTCTTAGAAATAAAATCTTGTTAGATTTAAAACCCGCACAACTTGCGGCTGTTATTGCAAGCTTAGTTTCTGAAGGGATCAAAGTCCGGTCCTGGAAAGATAACAACTACATATATGAACCCTCAAGTAAGGTAATTGACGTGGTAAATTTCTTGGAAGAGCAAAGAAGCATCCTCCAAAATCTTCAAGAGAGGCATGGAGTGAATGTTTTGTGCTGTTTGGATAGCCAATTTTCTGGTATGGTTGAGGCATGGGCTTCTGGTCTTACTTGGAGAGAAATGATGATGGATAGTGCAATGGATGAGGGAGATCTTGCTCGGCTTTTAAGACGGACTATTGATCTATTAGCTCAGATTCCAAAATTGCCCGATATAGACCCAGATTTGCAAATCAACGCAAAGTTAGCTTCTAGTGTTATGGACCGTCCTCCTATAAGTGAACTAGCTGGATGA 3660 41.86 MEKIMSPAMNTLTDFLSQRISTSSQLSFSSSTFKSNLSLQPHSATEILGFCFPKSLRTPSPISLRYRVCFESPRSVSHLKSHFSDADDDEDDYDDEDVAAEEYEDVSADLSEEVDQSDNEEDELSMEAAEETSALREELKWQRVENLVKEVREFGGEIDDVDELASIYNFRIDKFQRLAIKAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARKKRLFYTTPLKALSNQKFYEFRETFGDSYVGLLTGDSAVNKDAPILIMTTEILRNMLYQSVGMTSSGTGLFNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPEELAGWIGQIHGKTELVTTSKRPVPLTWHFSTKNSLLPLLDENGTHMNRHFSIFVPSPSPSQTLTSFMFPFVINWSRKLSLNYLQLQAPGVRSYKDDGSRRRNSRRRANDMDYDSNNSMSRQRSSSLSKNDINAIRRSQVPQVTDTLWHLKSRDMLPAIWFIFSRKGCDAAVQYVDGSNLLDECEISEVELALKKFRTLYPDAVRESAIKGLLQGVAAHHAGCLPLWKSFIEQLFQRGLVKVVFATETLAAGINMPARTSIIASLSKRTDSGRIQLSSNELLQMAGRAGRRGTDKRGHVVIIQTPFEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVTNRINEEDEEKSRLAKRTVEEARKLIEKSFGNYVSSSVMVAAQEELAKLQKEIEMLTSELTDEAIDRRSRQILSGKAYKEISDLQEELREEKRVRTELRRKMESERRSALKSLLREFENGQLPFLCLQYKDTEGVQHLIPAVYLGNMDSLNETKLRNLVSVENSSSLNVVNSETSLDGPKMNPEVESSYYVALGSDNSWYLFTEKWIKTVYKTGFPNLALAQGDALPREIMRRLLDKEDMKWDKLSDSELGGIWSMEGSLETWSWSLNVPVLNSLSGDDELLQMSQTYLESLEHYKEQRNKVARLKKNIVRTEGFREYKRIIDMTKITQDKIRRLRARSKRLTNRIEQIEPSGWKEFLQISNVIHEIRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVIASLVSEGIKVRSWKDNNYIYEPSSKVIDVVNFLEEQRSILQNLQERHGVNVLCCLDSQFSGMVEAWASGLTWREMMMDSAMDEGDLARLLRRTIDLLAQIPKLPDIDPDLQINAKLASSVMDRPPISELAG 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8445183 8450373 - Conep13aG0103700.1 Cone13ag1006 451393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1006 1219 Coils Coil 753 780 - -
Cone13ag1006 1219 Gene3D - 131 351 IPR027417 -
Cone13ag1006 1219 MobiDBLite consensus disorder prediction 442 459 - -
Cone13ag1006 1219 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 667 IPR001650 -
Cone13ag1006 1219 Pfam DEAD/DEAH box helicase 174 331 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone13ag1006 1219 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 108 1214 IPR050699 GO:0003724(PANTHER)|GO:0006401(PANTHER)|GO:0055087(PANTHER)|GO:0070478(PANTHER)
Cone13ag1006 1219 Gene3D - 1001 1211 - -
Cone13ag1006 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 633 IPR027417 -
Cone13ag1006 1219 MobiDBLite consensus disorder prediction 422 459 - -
Cone13ag1006 1219 MobiDBLite consensus disorder prediction 423 441 - -
Cone13ag1006 1219 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 344 IPR014001 -
Cone13ag1006 1219 Coils Coil 711 738 - -
Cone13ag1006 1219 CDD SF2_C_Ski2 476 633 - -
Cone13ag1006 1219 SMART DSHCT_2 1044 1218 IPR012961 -
Cone13ag1006 1219 Pfam DSHCT (NUC185) domain 1051 1214 IPR012961 -
Cone13ag1006 1219 MobiDBLite consensus disorder prediction 104 126 - -
Cone13ag1006 1219 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 1001 1211 - -
Cone13ag1006 1219 SMART ultradead3 168 358 IPR014001 -
Cone13ag1006 1219 SMART helicmild6 535 621 IPR001650 -
Cone13ag1006 1219 Coils Coil 100 127 - -
Cone13ag1006 1219 Gene3D - 352 652 IPR027417 -
Cone13ag1006 1219 Coils Coil 677 697 - -
Cone13ag1006 1219 FunFam ATP-dependent RNA helicase 132 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1006 K26077 - - vvi:100253458 1645.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1006 Cone-Chr13:8445183 Cone4ag1024 Cone-Chr4:8950050 6.61E-65 dispersed
Cone13ag1006 Cone-Chr13:8445183 Cone19ag1000 Cone-Chr19:7493977 7.13E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g801 . Blo16g01143 . Bda11g01247 Bpe13g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1006 Cone19ag1000 . . . . . . . . Bda07g01543 Bda11g01247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01726 Chy09g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012724 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28