Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1015 ATGGAGGTATCGTGGTCCGACTGCTTCTCCGATTTACTTTGCGACGAGGAATCCTCTGAAATATTGTCCGAAGAGTCACCGGAATGTTCTTCGGACCTCGAGTCTTCGGCCTTCGTTGAGGAATCAATCGCCGGATTCATTGAAGACGAGAGGCACTTCGTGCCTGGCTTCGATTATTTGTGCCGATTTCAGTCCCAATCTCTGGACGAATCAGCTAGAGCAGAATCCGTCGCATGGATTCTCAAGGTCCAAGCTTACTATGGTTTTCAGCCGCTAACGGCGTATCTATCCGTCAACTACTTGGATCGGTTCCTTTACTTTCGCAGCTTCCCGCAAACTAATGGGAATGGATGGCCCTTGCAACTTCTCTCTGTTGCTTGCTTGTCGCTAGCAGCTAAAATGGAGGAACCTCTTGTTCCATCTTTATTGGATCTTCAGGTTGAGGGACCAAAGTACATATTTGAACCCAGAACGATATCCCGGATGGAGTTTCTTGTGCTCGGGGTGTTAGGATGGCGGCTCCGATCGGTAACACCATTTAACTTCATCGATTTCTTTGCATGCAAGCTCGATTCATCTGGAGCTTTTATGGGATTTTTAATTTCTCGAGCTACAGAAATTATCTTATCCAATATACGAGAGGCCAGCTTTGTTGAATACTGGCCCTCATGCATTGCTGCCTCTGCCTTGCTTTGTGCCGCAAGTGAAATTCCAAATTTGTCCCTTGTGAACCCGGGCCATGCTGAATCATGGTGCAATGGGCTTAGCAAGGAAAAGATCATCGGATGCTACCAGTTAATGCAAGATTTTGTACTCGACAGTAACCGGAGGAAGGCTCCGAAACTCTTACCGCAGCTCCGAGTCACAATCCGGGCTAGAATGAAGCCCACTACAGACTCTTCATCATCCTCTTACTCTTCATCTTCTTCTTCATCATCATCCATTAAAAGAAGAAAATTAAACAACTGCTTATGGGTAGATGATGACAAAGGAAATTCTGAGTGA 1005 46.17 MEVSWSDCFSDLLCDEESSEILSEESPECSSDLESSAFVEESIAGFIEDERHFVPGFDYLCRFQSQSLDESARAESVAWILKVQAYYGFQPLTAYLSVNYLDRFLYFRSFPQTNGNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGPKYIFEPRTISRMEFLVLGVLGWRLRSVTPFNFIDFFACKLDSSGAFMGFLISRATEIILSNIREASFVEYWPSCIAASALLCAASEIPNLSLVNPGHAESWCNGLSKEKIIGCYQLMQDFVLDSNRRKAPKLLPQLRVTIRARMKPTTDSSSSSYSSSSSSSSSIKRRKLNNCLWVDDDKGNSE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8489773 8493027 + Conep13aG0104600.1 Cone13ag1015 451402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1015 334 SMART Cyclin_C_2 177 314 IPR004367 -
Cone13ag1015 334 SUPERFAMILY Cyclin-like 35 174 IPR036915 -
Cone13ag1015 334 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Cone13ag1015 334 PANTHER CYCLINS 29 276 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone13ag1015 334 Gene3D - 47 238 - -
Cone13ag1015 334 CDD CYCLIN_AtCycD-like_rpt2 177 267 - -
Cone13ag1015 334 FunFam D2/4-type cyclin 56 175 - -
Cone13ag1015 334 Pfam Cyclin, C-terminal domain 177 278 IPR004367 -
Cone13ag1015 334 SUPERFAMILY Cyclin-like 159 278 IPR036915 -
Cone13ag1015 334 MobiDBLite consensus disorder prediction 294 317 - -
Cone13ag1015 334 Gene3D - 56 175 - -
Cone13ag1015 334 CDD CYCLIN_AtCycD-like_rpt1 72 172 - -
Cone13ag1015 334 Pfam Cyclin, N-terminal domain 46 175 IPR006671 -
Cone13ag1015 334 SMART cyclin_7 78 168 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1015 Cone-Chr13:8489773 Cone3ag1037 Cone-Chr3:29188468 5.93E-59 dispersed
Cone12ag0627 Cone-Chr12:5632982 Cone13ag1015 Cone-Chr13:8489773 1.70E-141 wgd
Cone13ag1015 Cone-Chr13:8489773 Cone19ag1009 Cone-Chr19:7532746 5.78E-220 wgd
Cone13ag1015 Cone-Chr13:8489773 Cone8ag0642 Cone-Chr8:6340215 1.33E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1015 K18810 - rcu:8281928 471.085