Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag1015 | ATGGAGGTATCGTGGTCCGACTGCTTCTCCGATTTACTTTGCGACGAGGAATCCTCTGAAATATTGTCCGAAGAGTCACCGGAATGTTCTTCGGACCTCGAGTCTTCGGCCTTCGTTGAGGAATCAATCGCCGGATTCATTGAAGACGAGAGGCACTTCGTGCCTGGCTTCGATTATTTGTGCCGATTTCAGTCCCAATCTCTGGACGAATCAGCTAGAGCAGAATCCGTCGCATGGATTCTCAAGGTCCAAGCTTACTATGGTTTTCAGCCGCTAACGGCGTATCTATCCGTCAACTACTTGGATCGGTTCCTTTACTTTCGCAGCTTCCCGCAAACTAATGGGAATGGATGGCCCTTGCAACTTCTCTCTGTTGCTTGCTTGTCGCTAGCAGCTAAAATGGAGGAACCTCTTGTTCCATCTTTATTGGATCTTCAGGTTGAGGGACCAAAGTACATATTTGAACCCAGAACGATATCCCGGATGGAGTTTCTTGTGCTCGGGGTGTTAGGATGGCGGCTCCGATCGGTAACACCATTTAACTTCATCGATTTCTTTGCATGCAAGCTCGATTCATCTGGAGCTTTTATGGGATTTTTAATTTCTCGAGCTACAGAAATTATCTTATCCAATATACGAGAGGCCAGCTTTGTTGAATACTGGCCCTCATGCATTGCTGCCTCTGCCTTGCTTTGTGCCGCAAGTGAAATTCCAAATTTGTCCCTTGTGAACCCGGGCCATGCTGAATCATGGTGCAATGGGCTTAGCAAGGAAAAGATCATCGGATGCTACCAGTTAATGCAAGATTTTGTACTCGACAGTAACCGGAGGAAGGCTCCGAAACTCTTACCGCAGCTCCGAGTCACAATCCGGGCTAGAATGAAGCCCACTACAGACTCTTCATCATCCTCTTACTCTTCATCTTCTTCTTCATCATCATCCATTAAAAGAAGAAAATTAAACAACTGCTTATGGGTAGATGATGACAAAGGAAATTCTGAGTGA | 1005 | 46.17 | MEVSWSDCFSDLLCDEESSEILSEESPECSSDLESSAFVEESIAGFIEDERHFVPGFDYLCRFQSQSLDESARAESVAWILKVQAYYGFQPLTAYLSVNYLDRFLYFRSFPQTNGNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGPKYIFEPRTISRMEFLVLGVLGWRLRSVTPFNFIDFFACKLDSSGAFMGFLISRATEIILSNIREASFVEYWPSCIAASALLCAASEIPNLSLVNPGHAESWCNGLSKEKIIGCYQLMQDFVLDSNRRKAPKLLPQLRVTIRARMKPTTDSSSSSYSSSSSSSSSIKRRKLNNCLWVDDDKGNSE | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8489773 | 8493027 | + | Conep13aG0104600.1 | Cone13ag1015 | 451402 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag1015 | 334 | SMART | Cyclin_C_2 | 177 | 314 | IPR004367 | - | |
Cone13ag1015 | 334 | SUPERFAMILY | Cyclin-like | 35 | 174 | IPR036915 | - | |
Cone13ag1015 | 334 | ProSitePatterns | Cyclins signature. | 73 | 104 | IPR048258 | - | |
Cone13ag1015 | 334 | PANTHER | CYCLINS | 29 | 276 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cone13ag1015 | 334 | Gene3D | - | 47 | 238 | - | - | |
Cone13ag1015 | 334 | CDD | CYCLIN_AtCycD-like_rpt2 | 177 | 267 | - | - | |
Cone13ag1015 | 334 | FunFam | D2/4-type cyclin | 56 | 175 | - | - | |
Cone13ag1015 | 334 | Pfam | Cyclin, C-terminal domain | 177 | 278 | IPR004367 | - | |
Cone13ag1015 | 334 | SUPERFAMILY | Cyclin-like | 159 | 278 | IPR036915 | - | |
Cone13ag1015 | 334 | MobiDBLite | consensus disorder prediction | 294 | 317 | - | - | |
Cone13ag1015 | 334 | Gene3D | - | 56 | 175 | - | - | |
Cone13ag1015 | 334 | CDD | CYCLIN_AtCycD-like_rpt1 | 72 | 172 | - | - | |
Cone13ag1015 | 334 | Pfam | Cyclin, N-terminal domain | 46 | 175 | IPR006671 | - | |
Cone13ag1015 | 334 | SMART | cyclin_7 | 78 | 168 | IPR013763 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag1015 | Cone-Chr13:8489773 | Cone3ag1037 | Cone-Chr3:29188468 | 5.93E-59 | dispersed | |
Cone12ag0627 | Cone-Chr12:5632982 | Cone13ag1015 | Cone-Chr13:8489773 | 1.70E-141 | wgd | |
Cone13ag1015 | Cone-Chr13:8489773 | Cone19ag1009 | Cone-Chr19:7532746 | 5.78E-220 | wgd | |
Cone13ag1015 | Cone-Chr13:8489773 | Cone8ag0642 | Cone-Chr8:6340215 | 1.33E-90 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag1015 | K18810 | - | rcu:8281928 | 471.085 |