Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1027 ATGTTAGCTACAACGCAGGAGGAAGAAGAAGGAGAAGAAGAATACGGTAAGTACTTCAGAGCACGAACATATGTTTCATTTCAGACAGTCTACCATATACTACGCGGCGCTCATTTTCTGGTGTTTGATAGCTTACTGTACTCGGTTTCCCCTTGGATCTGTTTGAGGTTTCTCAGAGCTTCAACCACGGATCAAATCATGAATCCTTTCTCATCCGGAACACGGCTGAGGGATATGATCCGGGCTGTGAGGGCGTGCAAAACTGCGGCAGAGGAACGTGGGGTTATTAGAAAAGAGTGTGCTGCTATTCGAGCAGCGATTAATGAAAATGATCAAGATTATAGGCATCGTAACATTGCTAAGCTTATGTTCATTCACATGCTTGGCTACCCTACACATTTTGGTCAAATGGAATGCCTCAAGTTGATTGCTTCTGCTGGTTTCCCAGAGAAGAGGATAGGGTATCTTGGTCTCATGTTACTTCTTGATGAGAGACAAGAAGTTCTAATGTTGGTTACAAACTCATTGAAACAAGATCTCAATCACTCAAACCAGTATATTGTGGGACTCGCTCTTTGTGCTTTGGGAAATATTTGTTCGGCTGAGATGGCCCGTGATCTAGCACCAGAAGTGGAAAGACTGCTACAATTCCGTGACCCAAATATTAGAAAGAAAGCTGCATTGTGTTCGATAAGAATTATAAGGAAAGTCCCAGAGCTGGCTGAAAATTTTATAAATCATGCAGCTTCCTTACTAAAAGAAAAGCATCATGGGGTTTTGATAACAGGAGTTCAACTTTGTACCGATCTTTGTAAAGTTAGTACGGAAGCCCTCGAGTATTTTAGAAAGAAATGCACAGAGGGAACAGTCAAGACACTAAAGGATCTGGTCAATAGTTCATATTCACCAGAGTATGACATTGCTGGCATTGTGGACCCTTTCCTTCATATCCGACTGCTTAGGCTTTTGCGTGTATTGGGCCAAGGAGATGCAGATGCTAGTGAAAAAATGAACGATATTCTTGCCCAGGTGGCAACAAAAACTGAATCAAACAAAAATGCAGGGTATTCTATTCTGTATGAATGTGTCGAAACTATTATGAGCATTGAAGATAATGGTGGCTTACGTGTGCTTGCTATCAATATCTTGGGAAGATTCTTATCCAATCGTGACAACAATATCAGGTATGTGGCATTAAACATGCTCATGAAGGCAATTACGGTGGATGCTCAAGCGGTGCAGAGGCATCGGACGACAATCTTGGAATGTGTAAAGGATACAGATGCTTCAATTCAGAAAAGGGCCCTGGAACTTGTTTATGTTCTAGTGAATGATAGCAATGTAAAACCTCTTACAAAAGAGTTAATCGAGTATCTGGAAGTAGCGGATCAAGAATTTAGGGGAGATCTTACTACAAAAATATGCTCTATTGTCTCCAAGTTTTCCCCTGAGAAGATTTGGTACATTGATCAGATGCTGAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCATGCCCTTATTGTTGTGATAAGTAATGCTTCTGACCTCCATAAATACACTGTAAGAGCATTATACAGAGCGCTGCAGATTTCTACTGAACAGGAAAGTCTTGTTCGTGTAGCAGTTTGGTGTATTGGAGAATATGGTGATATGCTGGTCAATAATGTTGGGATGTCTGATATAGAGGATCAAATAACAGTCACAGAGTCTGATGCTGTGGATGTCGTAGAGGCTGTTATTAAGCACCATATCCCAGATCTAAACACGAAAGCAATGGCTTTGATTGCTCTTCTGAAGCTGTCTTCACGATTCCCATCTTGTTCTGAGAGGATCAGAGGTTTAGTTACTCAATACCAAGGAAGCCTTGTTCTCGAATTGCAGCAAAGATCTACTGAGTTCAATTCTATTATTGCAAAGCATCAGAATATTAGGTTGGCATTGGTTGAGCGGATGCCAGTTTTAGACGAGGCAACATTCATGGGAAGGAGGGCTGACTCTATGCCAGCATCAGTTTCTACTCCCAATGGGACTTCAATTAGTATTCCAAATGGAGTTGCTAAATTTGCTGCAGCTCCTCTGGTTGATTTACTTGATCTTAGTTCCGAAGATGCTGTCGCTCCCAGCTCTTCTGGTAGCGATCTTATCCAGGATCTTTTTGGTCTTGATTTATCTCCAGCTTCCAAACAATCAGGTATAAATTTAACCCCAAAGAGTGGGACAGATGCTCTACTGGATATTTTGTCTATTGGAACACCTCCTGCACAAAGCCTGCCTTCTACTTCAGACATATTTTCTGATCAAGATAAGAGGACACCTGTCATGCCATTCGACGGACTCTCATCTCTCTCTTCACTTCCTACACAAACCACTTCTCCTGTTGGATCTTCTCCCATGATGGATTTATTGGACGGCTTTGCTCCTAAACCATCATCCCTTGAAGACAACGGTACAGCTTATCCATCGGTAGTCGCCTTTGAGAGCAGCTCCTTGAGAATAACATTTAATTTCTCCAAGTCACCTGGAAATCCACAAACAACATCGATCAAGGCTACTTTTACAAATTTATCACCTAATGCCTATACAAATTTTATTTTCCAGGCAGCAGTTCCAAAGTTTCTTCAGTTGCAACTGGATCCAGCAAGCGGCAATACTCTCCCTGGACATAGTAACGGGTCTATCACACAAAATTTAAGAGTAACTAACACCCAACATGGAAAGAAATCCCTCGTCATGCGTATAAAGATAGCATACAAGACGAACGAGAAAGATGTTTTGGAAGAAGGGCAAATCAATAACTTCCCCCGCGGTTTATGA 2829 41.64 MLATTQEEEEGEEEYGKYFRARTYVSFQTVYHILRGAHFLVFDSLLYSVSPWICLRFLRASTTDQIMNPFSSGTRLRDMIRAVRACKTAAEERGVIRKECAAIRAAINENDQDYRHRNIAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIRKVPELAENFINHAASLLKEKHHGVLITGVQLCTDLCKVSTEALEYFRKKCTEGTVKTLKDLVNSSYSPEYDIAGIVDPFLHIRLLRLLRVLGQGDADASEKMNDILAQVATKTESNKNAGYSILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRTTILECVKDTDASIQKRALELVYVLVNDSNVKPLTKELIEYLEVADQEFRGDLTTKICSIVSKFSPEKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHKYTVRALYRALQISTEQESLVRVAVWCIGEYGDMLVNNVGMSDIEDQITVTESDAVDVVEAVIKHHIPDLNTKAMALIALLKLSSRFPSCSERIRGLVTQYQGSLVLELQQRSTEFNSIIAKHQNIRLALVERMPVLDEATFMGRRADSMPASVSTPNGTSISIPNGVAKFAAAPLVDLLDLSSEDAVAPSSSGSDLIQDLFGLDLSPASKQSGINLTPKSGTDALLDILSIGTPPAQSLPSTSDIFSDQDKRTPVMPFDGLSSLSSLPTQTTSPVGSSPMMDLLDGFAPKPSSLEDNGTAYPSVVAFESSSLRITFNFSKSPGNPQTTSIKATFTNLSPNAYTNFIFQAAVPKFLQLQLDPASGNTLPGHSNGSITQNLRVTNTQHGKKSLVMRIKIAYKTNEKDVLEEGQINNFPRGL 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8552982 8560703 - Conep13aG0105800.1 Cone13ag1027 451414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1027 942 MobiDBLite consensus disorder prediction 782 800 - -
Cone13ag1027 942 Pfam Adaptin C-terminal domain 826 939 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
Cone13ag1027 942 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 822 939 IPR008153 -
Cone13ag1027 942 Gene3D - 60 660 IPR011989 -
Cone13ag1027 942 SUPERFAMILY Clathrin adaptor appendage domain 800 941 IPR013041 -
Cone13ag1027 942 FunFam AP-1 complex subunit gamma 68 660 - -
Cone13ag1027 942 FunFam AP-1 complex subunit gamma 813 942 - -
Cone13ag1027 942 SMART alpha_adaptinc2 819 939 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
Cone13ag1027 942 MobiDBLite consensus disorder prediction 781 800 - -
Cone13ag1027 942 PIRSF AP1_gamma 72 942 IPR017107 GO:0005794(InterPro)|GO:0016192(InterPro)|GO:0030121(InterPro)
Cone13ag1027 942 Pfam Adaptin N terminal region 93 645 IPR002553 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cone13ag1027 942 Gene3D - 810 940 - -
Cone13ag1027 942 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 77 930 IPR050840 GO:0006896(PANTHER)|GO:0030121(PANTHER)|GO:0035615(PANTHER)|GO:0140312(PANTHER)
Cone13ag1027 942 SUPERFAMILY ARM repeat 91 655 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1027 K12391 - - mdm:103402991 1417.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0633 Cone-Chr12:5709420 Cone13ag1027 Cone-Chr13:8552982 0 dispersed
Cone13ag1027 Cone-Chr13:8552982 Cone5ag1367 Cone-Chr5:8345300 8.53E-75 dispersed
Cone13ag1027 Cone-Chr13:8552982 Cone19ag1018 Cone-Chr19:7599875 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41