Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1038 ATGGAAGCCATGTTCATGCTCACACCTCCTTCTTCTTCACTTCCCAGATTGATATTACCTTCTCAATCTATCTCTTATTCAAAATCTTCAGCTCGATTTCCTCTCTCGTTTTCCTTCACTTTCCGGGAAAGCAGAAGAAGAAGTAAGGCAACCAGAATACCGCAATTTAGAGTTTCTGCGAGTTCGCAGCCTTCCCCTGCTTCGTCAACTGTCGCATCGGAGATTTCGTCGGTTCCGTCTGTAATGAAGGCGTGGGTGTATGGAGAATACGGTAGCGTCGAAGTTTTGAAGTTTGATGAGAATGTGGCTGTGCCTGAAGTGAAGGACGATCAGGTTCTGATAAAAGTTGTTGCTGCTGCGCTTAATCCTGTTGATTTTAAGAGGCGACTGGGAAAGTTTAAGGTCACCGATTCTCCACTTCCGACTGTTCCTGGCTATGATGTAGCTGGAGTGGTGGTGAAGGTAGGGAGCAAAGTAAAGGAGCTAAAGGAGGGAGATGACGTATACGGGGATATAAATGAGAAAGCATTGGATGGACCCAAACAATTTGGATCATTGGCAGAGTACACTGCTGTTGAGGAAAAACTATTAGCTTTAAAGCCTAAGAACCTTGATTTTGCTCAGGCTGCTGGGTTGCCCCTTGCTATTGAGACAGCCTATGAGGGTCTTGAAAAAACCGGGTTTTTGGCCGGGAAGTCAATTCTCGTTTTGAATGGTTCTGGTGGAGTTGGCAGCCTTGTCATTCAGCTAGCAAAACACGTCTTTGGTGCTTCAAAAGTTGCAGCCACATCAAGCACAAGGAATCTGGAGCTGTTAAAAAGCTTGGGTGCCGATTTAGCCATTGATTATACCAAGGAAAATTTCGAGGATTTGCCCGAAAAATTCGATGTAGTCTATGATGCCATTGGCCAGTGTGATCGGGCGGTGAAAGTGGTGAAAGAAGGCGGAGGTGTGGTGGCTCTTACCGGTGCCGTTACACCTCCAGGATTTAGATTTGTGGTGACTTCTAATGGAGATGTCTTGAAGAAACTAAATCCATATTTAGAGAGCGGCAAAGTGAAGCCGGTTGTGGATCCTAAAGGGCCTTTCCCCTTCTCTCAGGTAGTAGAGGCCTTCTCTTACATTGAGACGAACCGAGCTACGGGAAAGGTAGTTATATATCCAATTCCATGA 1173 45.78 MEAMFMLTPPSSSLPRLILPSQSISYSKSSARFPLSFSFTFRESRRRSKATRIPQFRVSASSQPSPASSTVASEISSVPSVMKAWVYGEYGSVEVLKFDENVAVPEVKDDQVLIKVVAAALNPVDFKRRLGKFKVTDSPLPTVPGYDVAGVVVKVGSKVKELKEGDDVYGDINEKALDGPKQFGSLAEYTAVEEKLLALKPKNLDFAQAAGLPLAIETAYEGLEKTGFLAGKSILVLNGSGGVGSLVIQLAKHVFGASKVAATSSTRNLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKVVKEGGGVVALTGAVTPPGFRFVVTSNGDVLKKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYIETNRATGKVVIYPIP 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8609558 8611628 + Conep13aG0106900.1 Cone13ag1038 451425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1038 390 SMART PKS_ER_names_mod 91 386 IPR020843 GO:0016491(InterPro)
Cone13ag1038 390 CDD MDR_like_2 82 386 - -
Cone13ag1038 390 SUPERFAMILY GroES-like 79 236 IPR011032 -
Cone13ag1038 390 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 74 390 IPR044626 GO:0016628(InterPro)
Cone13ag1038 390 Gene3D - 223 337 - -
Cone13ag1038 390 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 231 252 IPR002364 GO:0008270(InterPro)|GO:0016491(InterPro)
Cone13ag1038 390 Gene3D - 89 386 - -
Cone13ag1038 390 Pfam Alcohol dehydrogenase GroES-like domain 109 201 IPR013154 -
Cone13ag1038 390 Pfam Zinc-binding dehydrogenase 275 386 - -
Cone13ag1038 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 204 327 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1038 K18980 - - rcu:8282604 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1038 Cone-Chr13:8609558 Cone8ag1104 Cone-Chr8:9854077 1.12E-08 dispersed
Cone18ag1125 Cone-Chr18:8148230 Cone13ag1038 Cone-Chr13:8609558 4.22E-95 transposed
Cone20ag0734 Cone-Chr20:5027415 Cone13ag1038 Cone-Chr13:8609558 1.96E-36 transposed
Cone13ag1038 Cone-Chr13:8609558 Cone16ag0921 Cone-Chr16:9454367 1.44E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g707 . . . . . . Bma14g01793 . . . . . . . Sed01g1019 . Cpe01g01529 Bhi07g01725 Tan04g1230 Cmetu09g1229 Lac13g0203 Hepe10g1643 . . Cla05g02539 Cam05g2729 Cec05g2760 Cco05g2800 Clacu05g2730 Cmu05g2583 Cre05g2697 Cone13ag1038 . . . Lsi04g00547 Csa05g02339 Chy10g00906 Cme10g00520 . Blo11g00915 Bda07g01601 . . . . . . Cmo04g02843 . Cma04g01730 . Car04g01763 . . . . . . . . . . . . . . . . . . . Chy09g00330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011084 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30