Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1041 ATGTCTTCTTCTTCAGATGCTTCTTCTCCTTCTCAGCAGGATTTCTCCACCCCATCATCTCCGCCAGCTTCTTCCGGAAGCTCTACTCCTCCACCAGAATCAACCTTCGACCCATCCTTAATCAAAGATACCCCTCCTCCTCCAAGTCAATCCTCCAACTCATCCTCACCTCTATCCCCCGATCGAAGTGGTGGCGGTTCTTCATCGTCTCCTCCATCAAGCTCACACCCCTCTCCTCCACCAAATTCTCCACCACCATCTTCACCACTATCATCTCCCCCGCCTAAGTCACCGCCACCCTCATCCCCTCCTCCTCGTCAAACCTCATCACCACCTCCACCATCACCAAGTTCTTCAAACTCACCACCCTCCCAAACAAGCACTACTAATTCACCTCCCCCATCACCGTCTGAAGACCATGGTGCTGATTCACCCAAGCATTCACCGCCACCATCCACAACACCCTCACCTCCACCATCATCACCAGTTCCTCCAACCTCCGACGACTCCCCCTCTCCAGCCGAAAAATCTGCTCCACAAGATTTCAAAAGCCCTCCACCACCAGCTTCAGGCGCTCTTCCAAACATAAATCGTCATCCAGGAACACCCGATACAAACCCAACCCCTCCTCCAAATTCTAGAGCGATTCCATCTTCGAAAACTCCTTCCGCATCAAATTCATCATCCAAGTCTGGCGACTCCAGTTCTCCTCCATCAGCGCCCAAATCGTCATCATCGTCGAGTTCCCTTCTGGGATTAGCGATCAGTATGGGAGTGGTTGCAGTAGCCATCATTGCGGTTTTATGTCTCATTTTCATGTTTTGTCGGAAAAGGAAACACCGTCGTTCTTACGTCCATGCTGCCCCACTCTACCAGACCCCGGATGGAAATTACTACCCACCGCAACATAGCGGTATCTATTCGGGCCCACACGATCCCTACTACACTCAAGGCTCGAACCCTTCTTTTATAGATGGCAATGGAAGTCAAAGAGGAGGCAATCCATATCATGGACCCGAGATGGGAAATTCAAAGACCTTCTTTAGCTACGAGGAGTTAATGGAAATTACAGGCGGGTTTTCCCGCCAGAATGTTCTGGGTGAAGGTGGTTTTGGTGCAGTTTACAAGGGTTTCTTGTCAGATGGAAAACCGGTGGCGGTTAAGCAGTTGAAGGCGGGCAGTGGTCAGGGGGAGAGAGAGTTCCAGGCGGAGGTTGAAATAATTAGCCGTGTTCATCACCGGCATTTGGTGTCTCTGGTCGGTTACTGTATCTCGGACCATCATAGGCTGCTTATCTATGAATTTGTTCCTAATAATACACTTGAGCATCATTTACATGCCAAAGGAATCCCGGTGTTGGATTGGAGTAAAAGGATGAAGATTGCTGTAGGAGCTGCAAAGGGTTTGGCTTACTTGCATGAAGATTGCCATCCAAAAATTATTCACAGAGACATTAAGTCTGCAAATATTCTATTAGATGATGTATATGAAGCTCAGGTTGCAGATTTTGGACTTGCCAAACTATCAAATGATACTGGGACCCATGTTTCAACTCGGGTCATGGGTACATTCGGATACATGGCACCAGAGTATGCATCGAGTGGGAAATTAACAGATAGATCAGATGTATTCTCATTCGGAGTTGTGCTCTTAGAGCTCGTAACCGGACGGAAACCAGTCGACCCGACCCTGCCCTTGGGTGATGAGAGTTTGGTTGAATGGGCTCGTCCCATGCTTAGTCAAAGCCTGGAAAGTGGTGAAGTAGGCGAGTTAGTCGATCCAAAGCTTGAAAAGTATTATGTAGAAGGTGAAATGTTCAGAATGATAGAAGCTGCTGCAGCCTGTGTTCGCCATTCTGCTACTAAACGGCCTCGTATGGCTCAGGTTGTGAGGGCATTAGACACAGATGGTGGGTATGACCTCTCAAATGGGATGAAGTATGGACAGAGCACAGTGTATGAGTCTGGTCAATACAACCAAGACATTATGAAGTTCAGGATGATGGCACTAGAGGGCATAGGAGACAGCTCTGAGTATCAGAACCACAGTGGAGATTATGCGGCCAAAGAACTTTCCAGACCTCCGGATTATGGGAAGTCTTCGGAATGTACTAGTGGCGAATCAGAAACCAGAGCCTTTACGGGTTCCAAAAACAGCCACAGCACTCGTCTGTTTTAA 2178 48.44 MSSSSDASSPSQQDFSTPSSPPASSGSSTPPPESTFDPSLIKDTPPPPSQSSNSSSPLSPDRSGGGSSSSPPSSSHPSPPPNSPPPSSPLSSPPPKSPPPSSPPPRQTSSPPPPSPSSSNSPPSQTSTTNSPPPSPSEDHGADSPKHSPPPSTTPSPPPSSPVPPTSDDSPSPAEKSAPQDFKSPPPPASGALPNINRHPGTPDTNPTPPPNSRAIPSSKTPSASNSSSKSGDSSSPPSAPKSSSSSSSLLGLAISMGVVAVAIIAVLCLIFMFCRKRKHRRSYVHAAPLYQTPDGNYYPPQHSGIYSGPHDPYYTQGSNPSFIDGNGSQRGGNPYHGPEMGNSKTFFSYEELMEITGGFSRQNVLGEGGFGAVYKGFLSDGKPVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCISDHHRLLIYEFVPNNTLEHHLHAKGIPVLDWSKRMKIAVGAAKGLAYLHEDCHPKIIHRDIKSANILLDDVYEAQVADFGLAKLSNDTGTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELVTGRKPVDPTLPLGDESLVEWARPMLSQSLESGEVGELVDPKLEKYYVEGEMFRMIEAAAACVRHSATKRPRMAQVVRALDTDGGYDLSNGMKYGQSTVYESGQYNQDIMKFRMMALEGIGDSSEYQNHSGDYAAKELSRPPDYGKSSECTSGESETRAFTGSKNSHSTRLF 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8618068 8620688 + Conep13aG0107200.1 Cone13ag1041 451428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1041 725 MobiDBLite consensus disorder prediction 73 120 - -
Cone13ag1041 725 MobiDBLite consensus disorder prediction 148 169 - -
Cone13ag1041 725 SUPERFAMILY Protein kinase-like (PK-like) 337 633 IPR011009 -
Cone13ag1041 725 MobiDBLite consensus disorder prediction 698 725 - -
Cone13ag1041 725 FunFam proline-rich receptor-like protein kinase PERK8 436 647 - -
Cone13ag1041 725 CDD STKc_IRAK 366 634 - -
Cone13ag1041 725 MobiDBLite consensus disorder prediction 687 725 - -
Cone13ag1041 725 MobiDBLite consensus disorder prediction 54 72 - -
Cone13ag1041 725 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 217 668 IPR047117 -
Cone13ag1041 725 Gene3D Phosphorylase Kinase; domain 1 335 435 - -
Cone13ag1041 725 MobiDBLite consensus disorder prediction 217 248 - -
Cone13ag1041 725 SMART serkin_6 360 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1041 725 Pfam Protein tyrosine and serine/threonine kinase 363 633 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1041 725 MobiDBLite consensus disorder prediction 121 137 - -
Cone13ag1041 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1041 725 PRINTS Proline rich extensin signature 98 114 - -
Cone13ag1041 725 PRINTS Proline rich extensin signature 45 57 - -
Cone13ag1041 725 PRINTS Proline rich extensin signature 18 34 - -
Cone13ag1041 725 PRINTS Proline rich extensin signature 77 98 - -
Cone13ag1041 725 FunFam Proline-rich receptor-like protein kinase PERK8 334 435 - -
Cone13ag1041 725 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524(InterPro)
Cone13ag1041 725 MobiDBLite consensus disorder prediction 1 35 - -
Cone13ag1041 725 ProSiteProfiles Protein kinase domain profile. 360 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1041 725 MobiDBLite consensus disorder prediction 317 338 - -
Cone13ag1041 725 Gene3D Transferase(Phosphotransferase) domain 1 436 640 - -
Cone13ag1041 725 MobiDBLite consensus disorder prediction 1 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1153 Cone-Chr12:9188170 Cone13ag1041 Cone-Chr13:8618068 3.39E-41 dispersed
Cone13ag1041 Cone-Chr13:8618068 Cone2ag0408 Cone-Chr2:2164959 2.04E-160 dispersed
Cone9ag0289 Cone-Chr9:1245040 Cone13ag1041 Cone-Chr13:8618068 3.77E-70 dispersed
Cone9ag1269 Cone-Chr9:9476795 Cone13ag1041 Cone-Chr13:8618068 1.04E-70 dispersed
Cone12ag0645 Cone-Chr12:5901197 Cone13ag1041 Cone-Chr13:8618068 2.80E-196 wgd
Cone13ag1041 Cone-Chr13:8618068 Cone19ag1031 Cone-Chr19:7670104 2.16E-286 wgd
Cone13ag1041 Cone-Chr13:8618068 Cone8ag0663 Cone-Chr8:6652064 3.31E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82042 PF07651 ANTH 3.00E-97 CL0009 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1041 - - - 0.0