Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1054 ATGGAAAATATAAGTTTCCTCATCTTCTGGAAAGTGAGTTTAGTATTTTTAGCATTAATGGAAGCTTCCTCTTCCTCTCTATCACCTACTGGTATCAACTATGAAGTTGTAGCTTTGATGGCGATAAGAAGTGATCTCATAGATCCACATAATGTTATGGAAAATTGGGATGGAAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACTTGCTCTTCTGATGGATATGTTTCGGCGTTGGGGCTGCCTAGCCAGAACTTTTCCGGCACCTTATCTCCTGGAATCGGATACCTCAGTAACTTGCAATATTTGTTGCTTCAGAATAATGCCATTTCGGGTCCGATCCCAGATTCTATTGGAAAGTTAGAGAAGCTTCAGACTCTGGATCTTTCAAACAATAGGCTAACCGGTCAGATACCGAGCTCTATAGGAAATCTAAGGAACCTGAATTATTTGCGGTTGAACAACAATACTCTTACCGGACCTTGTCCTGGGTCATTGTCCGAAGTTGACGGTCTCACTCTCGTGGACTTTTCTTTCAACAACCTGAGTGGTTCCTTGCCGAAAGTATCCACAAGAACTTTTAAAATTGTAGGTAACCCTTTGATTTGTAGCCCGAACAATTGGTCTGCCATCTTTCCTGAGCCACTCTCATTCCCACCCGATTCTCCTAAAGGCCTATCAGTATCTGGATCACAAGATCATCATGTCGCCGTTGCTTTCGGTTCAAGTTTCAGTGCTGCTTTTCTTTTTGTTGTTATTATCGGGATTCTTGTCTGGTGGCGATACCGTCACAACCAACAGATTTTCTTTGATCTCAACGATGATACGGAGCTAGGCTTGGGCCATTTGAAAAGGTACACTTATAAGGAGCTATGGACAGCAACAGACCATTTCAACCCAACCAATATTCTAGGTAGAGGTGGGTTCGGGATTGTCTACAAGGGATGTTTGAGTGATGGAAGCATTGTGGCGGTCAAAAGGTTGAAGGATTATAACATTGCCGGAGGGGAAGTCCAATTTCAGACAGAAGTGGAGACGATCGGTTTAGCCCTCCATAGGAATCTTCTAAGGCTTTGTGGATTCTGCTTGACCGAAAATGAACGCCTTCTTGTTTATCCTTACATGCCTAATGGTAGTGTAGCATCTCAATTAAGAGCTAGAGGACTTGTGTATTTGCATGAGCAATGTGACCCAAAGATCATCCACCGAGACGTCAAAGCAGCAAACATTTTGCTTGACGAAGACTTTGAAGCTGTTGTTGGAGATTTTGGATTGGCCAAACTTTTGGACCATAGAGATTCACATGTGACCACAGCCATTCGTGGGACAGTGGGCCACATCGCACCGGAATACTTATCGACCGGTCAGTCCTCAGAGAAGACCGACGTGTTTGGGTTTGGGGTCTTACTTCTTGAACTCATGACGGGTAAAAAGGCTTTAGATTTCGGACGAGGAGCTAACCATAAAGGGGTCATGCTTGATTGGGTGAAAAAGCTACACGAGGAAGGGAAGTTAAGTGTGATGGTGGATAAGGATTTAAGAGATAAATATGATGGATTGGAAATGGAGGAAATGGTTCAAATAGCTCTCCTGTGTACTCAATTTAATCCAGCTAAACGGCCAAGTATGGGGGAAGTGTTAAAGATGCTTCAAGGCGATGGGTTGCCAGAAAAATGGGAGGTTTCACTGCAAGTTGAGACATCGCCAAGGTTAGGATTTAGGCCATTTGATCAATTCCGGTCTCATCTGAGATATTGCGATTATATAGAGGAATCTTCACTTGTAGTTGAAGCAATGGAGCTTTCTGGGCCAAGATGA 1821 43.55 MENISFLIFWKVSLVFLALMEASSSSLSPTGINYEVVALMAIRSDLIDPHNVMENWDGNSVDPCSWRMVTCSSDGYVSALGLPSQNFSGTLSPGIGYLSNLQYLLLQNNAISGPIPDSIGKLEKLQTLDLSNNRLTGQIPSSIGNLRNLNYLRLNNNTLTGPCPGSLSEVDGLTLVDFSFNNLSGSLPKVSTRTFKIVGNPLICSPNNWSAIFPEPLSFPPDSPKGLSVSGSQDHHVAVAFGSSFSAAFLFVVIIGILVWWRYRHNQQIFFDLNDDTELGLGHLKRYTYKELWTATDHFNPTNILGRGGFGIVYKGCLSDGSIVAVKRLKDYNIAGGEVQFQTEVETIGLALHRNLLRLCGFCLTENERLLVYPYMPNGSVASQLRARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAIRGTVGHIAPEYLSTGQSSEKTDVFGFGVLLLELMTGKKALDFGRGANHKGVMLDWVKKLHEEGKLSVMVDKDLRDKYDGLEMEEMVQIALLCTQFNPAKRPSMGEVLKMLQGDGLPEKWEVSLQVETSPRLGFRPFDQFRSHLRYCDYIEESSLVVEAMELSGPR 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8658071 8660986 + Conep13aG0108500.1 Cone13ag1054 451441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1054 606 Pfam Protein kinase domain 302 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1054 606 ProSiteProfiles Leucine-rich repeat profile. 124 146 IPR001611 GO:0005515(InterPro)
Cone13ag1054 606 SUPERFAMILY L domain-like 33 233 - -
Cone13ag1054 606 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 212 - -
Cone13ag1054 606 PRINTS Leucine-rich repeat signature 146 159 - -
Cone13ag1054 606 PRINTS Leucine-rich repeat signature 125 138 - -
Cone13ag1054 606 Pfam Leucine Rich Repeat 148 168 IPR001611 GO:0005515(InterPro)
Cone13ag1054 606 Pfam Leucine rich repeat 90 135 IPR001611 GO:0005515(InterPro)
Cone13ag1054 606 SMART serkin_6 299 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1054 606 FunFam Somatic embryogenesis receptor-like kinase 1 376 571 - -
Cone13ag1054 606 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 606 - -
Cone13ag1054 606 ProSiteProfiles Protein kinase domain profile. 299 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1054 606 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cone13ag1054 606 Gene3D Transferase(Phosphotransferase) domain 1 376 569 - -
Cone13ag1054 606 Gene3D Phosphorylase Kinase; domain 1 270 375 - -
Cone13ag1054 606 Gene3D Ribonuclease Inhibitor 32 210 IPR032675 -
Cone13ag1054 606 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524(InterPro)
Cone13ag1054 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1054 606 FunFam Somatic embryogenesis receptor kinase 1 270 375 - -
Cone13ag1054 606 SUPERFAMILY Protein kinase-like (PK-like) 284 560 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1054 Cone-Chr13:8658071 Cone6ag0493 Cone-Chr6:2454752 2.03E-195 dispersed
Cone12ag0650 Cone-Chr12:5934516 Cone13ag1054 Cone-Chr13:8658071 4.31E-282 wgd
Cone13ag1054 Cone-Chr13:8658071 Cone19ag1043 Cone-Chr19:7708908 0 wgd
Cone13ag1054 Cone-Chr13:8658071 Cone8ag0675 Cone-Chr8:6742879 3.18E-283 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82043 PF02878 PGM_PMM_I 4.60E-27 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1054 - - - 0.0