Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1055 ATGGATGAAATGTACGGCCTACAATCGACGGCGCTGGAGTATTCAGAAAACGCGTTGATGTCGCCGGAGAATCTGATGCTACCGGTCGATTACCAGACCTTGCTTGCTTCCGGAGCCTTCCGCGACGATCGGATCCCGATTTTCGGATCAGAGGACTTGCTCTCCGCCGCTGCTTCCGCCATAATCGAAACTGAAGCAGCTGCCTCCAATAATAATAATAACAATATCTGGCCGGAAGTTCGACGAGAAGATGATATGCTGAGCTTGATCAAAGCTAAAATTGCTTCTCATCCTTGTTATCCTCGCTTGCTCGAAGCTTATATTGCTTGCCAGAAGGTAGGGGCGCCTTCGGAGATAGCGTGCGTGTTGGAGGAGATTCGGAGAGAAAACGATCTGTTTAATAAGCGGGACGTGGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTTATGGAAACGTACTGTGATATGTTGGTGAAGTATAAATCAGATCTGGAAAGGCCTTTTGATGAAGCAACTACGTTCTTGAACAAGATTGAATTGCAGCTCAGTAACCTTTGCAATGGTTCTTCCGTTAGAACCCATTCCGATGAAAGGGGTGCATCGTCAGATGATGGTTTTAGTGAGGGTGAGGCAGATGCACAGGAGGGTCAGTCAAAGGAAGAAGGCAGAGATCTTAAAGATCGGCTTTTACATAGATTTGGAAATCGAATTAGCACACTAAAGCTTGAATTCTCAAAGAAGAAGAAGAAAGGAAAACTACCTAGAGAAGCCAGGCAAACCCTTCATGAATGGTGGAATGCTCACTATAAGTGGCCATACCCCACGGAAGGTGATAAAAAGGCATTAGCGGATACAACGGGTTTGGATCAGAAGCAAATTAATAATTGGTTTATTAACCAACGGAAACGGCATTGGAAGCCATCTGCGAACATGCAATTTGAAATGATGGATAATCATTCTGGGCAGTTCTTTACAGATGACTAG 993 45.62 MDEMYGLQSTALEYSENALMSPENLMLPVDYQTLLASGAFRDDRIPIFGSEDLLSAAASAIIETEAAASNNNNNNIWPEVRREDDMLSLIKAKIASHPCYPRLLEAYIACQKVGAPSEIACVLEEIRRENDLFNKRDVVSTCFGADPELDEFMETYCDMLVKYKSDLERPFDEATTFLNKIELQLSNLCNGSSVRTHSDERGASSDDGFSEGEADAQEGQSKEEGRDLKDRLLHRFGNRISTLKLEFSKKKKKGKLPREARQTLHEWWNAHYKWPYPTEGDKKALADTTGLDQKQINNWFINQRKRHWKPSANMQFEMMDNHSGQFFTDD 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8661649 8668692 - Conep13aG0108600.1 Cone13ag1055 451442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1055 330 Gene3D - 246 323 - -
Cone13ag1055 330 SMART KNOX2_2 139 190 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag1055 330 Pfam KNOX1 domain 90 131 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag1055 330 MobiDBLite consensus disorder prediction 194 228 - -
Cone13ag1055 330 SMART ELK_2 227 248 IPR005539 GO:0003677(InterPro)
Cone13ag1055 330 Pfam KNOX2 domain 143 189 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag1055 330 SUPERFAMILY Homeodomain-like 248 323 IPR009057 -
Cone13ag1055 330 ProSitePatterns 'Homeobox' domain signature. 285 308 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone13ag1055 330 ProSiteProfiles ELK domain profile. 227 247 IPR005539 GO:0003677(InterPro)
Cone13ag1055 330 SMART HOX_1 249 314 IPR001356 GO:0003677(InterPro)
Cone13ag1055 330 CDD homeodomain 256 311 IPR001356 GO:0003677(InterPro)
Cone13ag1055 330 Pfam Homeobox KN domain 267 306 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone13ag1055 330 ProSiteProfiles 'Homeobox' domain profile. 247 310 IPR001356 GO:0003677(InterPro)
Cone13ag1055 330 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 320 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone13ag1055 330 SMART KNOX1_2 88 132 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1055 Cone-Chr13:8661649 Cone19ag0151 Cone-Chr19:836902 1.13E-97 dispersed
Cone13ag0151 Cone-Chr13:951520 Cone13ag1055 Cone-Chr13:8661649 3.81E-96 wgd
Cone13ag1055 Cone-Chr13:8661649 Cone19ag1044 Cone-Chr19:7712741 1.77E-201 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44658 PF00407 Bet_v_1 1.40E-12 CL0209 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1055 - - - 0.0