Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1083 ATGTCCATCTTTCTCATGGTGTCACAGTACAGCTTAGTAAGTTCTATCACTATCATTGTAACACTAGCACTCTCCTTGAGCTTGGCATCATCAACTGCAAAGCCATGTCATTTTCCGGCAATCTATAACTTTGGCGACTCCAATTCCGACACAGGTGGCTTATCCGCCGTGTTTGGCCAAGCCCCTCCGCCCAATGGCGAGTCATATTTCCACCGGCCAGCCGGTCGTTACTCCGATGGCCGTCTCATTGTCGACTTCATAGCCAAGAGCTTTGGATTGCCATATCTAAGCGCATATCTTGATGCTGTTGGAAGCAATTTTAGCCATGGTGCCAACTTTGCCACGGCCGGTTCCACCATTAGGCCCCAAAATAGAACCATACAACAAAGTGGGTTCAGCCCCATCTCTTTAGATGTTCAATACAACGAGTTTTATGCATTTCGTCGTAGGACCCAAGCCCTTCGACAAAGAGGTGGAGTTTTTGAGCAACTAATGCCAAAGGATGAAGATTTCTCTAGGGCTCTTTACACATTTGATATTGGTCAAAATGATTTAACGGCTGGTTATTTCTCCAACTTGTCAACCACTCAAGTCAAAGCCTATGTCCCTGATTTGCTTGCTCAATTCTCAAACATCGTTAGGTGGATACATGGTCAAGGAGGGAGATACTTTTGGATCCACAACACAGGCCCAGTGGGCTGCTTACCTTATGTCCTGGAACGTTTACCGGTCAAAGCACCACAAGTCAACGAATATGGATGTGCTACTCCTTTCAATGAAGTTGCGCAGTTTTTCAACCATGGTTTAAAACAAACTGTGGCTAAGTTAATAAAAGAGTTACCTCATGCTGCATTAACTTACGTTGATGTCTACTCTTTGAAATACGCTCTTTTTACCCATCCAACAAAGCATGGGTTTAAGGAACCGTTGAAGGCGTGTTGTGGCCATGGTGGGAAGTACAATTTCAATGTGAAGATTGGATGTGGAGGGAAGGTTAAGATTCATGGAAAAGAAGTACTGGTCGGAAAATCATGCGACGAACCGTCAGTTTACGTGAATTGGGATGGAGTGCATTTCACTCAGGCTGCTAATGAATGGATTTTTAATCAGATTAAGGACGGGAAATTTTCCGACCCGCCAAATGCTTTGAATATGGCCTGCTATAATTATCGTTCTTAA 1179 44.19 MSIFLMVSQYSLVSSITIIVTLALSLSLASSTAKPCHFPAIYNFGDSNSDTGGLSAVFGQAPPPNGESYFHRPAGRYSDGRLIVDFIAKSFGLPYLSAYLDAVGSNFSHGANFATAGSTIRPQNRTIQQSGFSPISLDVQYNEFYAFRRRTQALRQRGGVFEQLMPKDEDFSRALYTFDIGQNDLTAGYFSNLSTTQVKAYVPDLLAQFSNIVRWIHGQGGRYFWIHNTGPVGCLPYVLERLPVKAPQVNEYGCATPFNEVAQFFNHGLKQTVAKLIKELPHAALTYVDVYSLKYALFTHPTKHGFKEPLKACCGHGGKYNFNVKIGCGGKVKIHGKEVLVGKSCDEPSVYVNWDGVHFTQAANEWIFNQIKDGKFSDPPNALNMACYNYRS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8809752 8811939 - Conep13aG0111400.1 Cone13ag1083 451470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1083 392 Pfam GDSL-like Lipase/Acylhydrolase 41 371 IPR001087 GO:0016788(InterPro)
Cone13ag1083 392 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 22 370 - -
Cone13ag1083 392 FunFam GDSL esterase/lipase At1g09390 29 376 - -
Cone13ag1083 392 CDD SGNH_plant_lipase_like 39 374 IPR035669 -
Cone13ag1083 392 Gene3D SGNH hydrolase 27 374 IPR036514 -
Cone13ag1083 392 SUPERFAMILY SGNH hydrolase 40 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1083 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1083 Cone-Chr13:8809752 Cone7ag1533 Cone-Chr7:10604058 2.14E-141 dispersed
Cone14ag0399 Cone-Chr14:1851656 Cone13ag1083 Cone-Chr13:8809752 2.66E-91 transposed
Cone13ag1083 Cone-Chr13:8809752 Cone19ag1071 Cone-Chr19:7839857 2.10E-204 wgd
Cone13ag1083 Cone-Chr13:8809752 Cone2ag0086 Cone-Chr2:382468 4.31E-37 wgd
Cone13ag1083 Cone-Chr13:8809752 Cone8ag0696 Cone-Chr8:7028638 5.82E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g631 . . . . Bpe13g00512 . . . . Cmo18g00763 . . . . . . . . . . . . . . . . . . . . . Cone13ag1083 Cone19ag1071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1083 Cone19ag1071 . . . . . Cme10g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004340 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 6 43