Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1091 ATGTTGGGGAAGGAAGATGAACCCCCGTCCGCCGGTGGTACCATCCGAAGGCCCTATTTTCGGTCGGCCTCATGGACTGACCGGTCACCCACCAAGCCCATTAACCCTCTACCCAGACTCCATCCTAACAGCAAATTCAGGGCCTGTTTGCCCCCTCTTCAGCCCCTTTCCATAACCCGCCGGACTGCAGAGGAGTGGCCCAAGGCTGGGTCCGACGACCTCGGAGTCTGGCCTCATCCACAAACCCCCAGAGGCTCGGTTCCACAACATAATTCAGACAAGGAATTGCTGCCTGTTAGAGAATTCGAATTTAAGAAGGACAAGCTTGCCTTTTTCGACAAAGAATGCTCAAAAATTGTTGATCACATTTACTTGGGGAGTGATGCTGTGGCTAAGAATCGAGACATTTTGATACAAAATGAAATCACCCATGTGCTCAATTGTGTCGGGTTTGTTTGTCCCGAGTATTTCAAGAATGATTTCGTGTACAAAACTCTTTGGTTGCAAGACAGTCCTTCTGAGGACATTACGAGCATTTTTTATGATGTTTTTGATTACTTTGAGGATGTTAGGGAACAAAATGGTCGTGTTTTCGTCCATTGTTGTCAAGGAGTGTCTAGATCGACGGCTCTTGTCATTGCATATCTCATGTGGAGACAAGGACAAAGCTTTGAGGATGCTTTCCAATACGTGAAAGCAGCAAGAGGAGTGACTAATCCGAACATGGGGTTTGCTTGTCAGTTGCTTCAGTGTCAGAAGCGGGTCCATGCAGTCCCCGCTAGCCCAAGTTCCATTTTGAGGATGTATAAGATGGCCCCACACTCGCCTTACGACCCACTCCATCTTGTTCCGAAGATGTTGAACAAGCCGGGTGTTTATGGACTTGATTCTCGTGGGGCCTTTGTGGTGCATATTCCTACTGTGATCTATGTTTGGATGGGGAAGAAGTGTGATTTGATGATGAGGAATATGGCAAGTGTAGCTGCTTCTCAGGTTGTTAGGTATGAGCGGGCAAAGGGTCCAATTGTTATGATTGAGGAAGGTGAAGAGCCGTTAGAATTTTGGGATATTCTAGCAGGTGGGGAAGATGCCAGGTCCTTTCGAGAGGGTAAGGTTGGTGAAAGAAATGTCGATGATTACAATTTGGATTTTGAGATCTTCTTTAAGGCGCTTTCTCACAAGGCGGGTACACCATTTTTTGGGACAGATAATGGATCGGTTCGGGAAACTGGGTGGGGTAGAGTGCAGAGAAAGTTGTCTAATATGAAAGAATTGAGTTCTAATATCACCAGTACTAATACTACGACTGCTGCTTCACCTACTCAAGATGAAGTTTCTAGAACTGACCCTTCTTCACCAACAACCTATTTGTGCAGCCCGGAAACTCAACCTTCATTAATGCCAACAAATCCTCCTAGTTCGCCAGATTCACTATTTTATTTTCCAGGAAGGAATGTAATGTTTGGTACCAAATCTCCTACATTGTCGCCTTCAACGTCTGACTACAGTTCTTTTCCATTTTCACCCTCATCGTCAAACTGGTCCGATTTTTCGTACTTGTCATCTTCTCAACAAGTTTCGCCTTCCGGTTTGGAATCAATGGAGCTGATTCCAGATTTGCCTGCGGAATCAATGGGGCCGATTCCCGAGTCTTTTCCGTCAAAAGGGTTGTCTCCTCCTTCCATTGCGGAGAGAAGAGGGAGTCATCCTCCGCCTTTAATGTTGCTTCCTTCTGGTGAAGAACCGCGCAAGGCTCGGAGAGCAATGGTGAGATCATTGTCGTTTTCGTTGCCTGAATTAGATGACGATGATGATTTGATGGTGGATTTAAATAATGAGGAGGATATCGGCATCTGTTTAAGTGACAAGGCTCTTTGA 1878 46.01 MLGKEDEPPSAGGTIRRPYFRSASWTDRSPTKPINPLPRLHPNSKFRACLPPLQPLSITRRTAEEWPKAGSDDLGVWPHPQTPRGSVPQHNSDKELLPVREFEFKKDKLAFFDKECSKIVDHIYLGSDAVAKNRDILIQNEITHVLNCVGFVCPEYFKNDFVYKTLWLQDSPSEDITSIFYDVFDYFEDVREQNGRVFVHCCQGVSRSTALVIAYLMWRQGQSFEDAFQYVKAARGVTNPNMGFACQLLQCQKRVHAVPASPSSILRMYKMAPHSPYDPLHLVPKMLNKPGVYGLDSRGAFVVHIPTVIYVWMGKKCDLMMRNMASVAASQVVRYERAKGPIVMIEEGEEPLEFWDILAGGEDARSFREGKVGERNVDDYNLDFEIFFKALSHKAGTPFFGTDNGSVRETGWGRVQRKLSNMKELSSNITSTNTTTAASPTQDEVSRTDPSSPTTYLCSPETQPSLMPTNPPSSPDSLFYFPGRNVMFGTKSPTLSPSTSDYSSFPFSPSSSNWSDFSYLSSSQQVSPSGLESMELIPDLPAESMGPIPESFPSKGLSPPSIAERRGSHPPPLMLLPSGEEPRKARRAMVRSLSFSLPELDDDDDLMVDLNNEEDIGICLSDKAL 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8834505 8837163 - Conep13aG0112300.1 Cone13ag1091 451478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1091 625 MobiDBLite consensus disorder prediction 71 92 - -
Cone13ag1091 625 Pfam Dual specificity phosphatase, catalytic domain 123 253 IPR000340 GO:0016311(InterPro)
Cone13ag1091 625 ProSiteProfiles Dual specificity protein phosphatase domain profile. 115 257 IPR020422 GO:0006470(InterPro)
Cone13ag1091 625 SMART dsp_5 115 254 IPR020422 GO:0006470(InterPro)
Cone13ag1091 625 PANTHER MKPA PROTEIN 7 588 - -
Cone13ag1091 625 MobiDBLite consensus disorder prediction 426 478 - -
Cone13ag1091 625 SMART VILL_6 267 361 IPR007122 GO:0051015(InterPro)
Cone13ag1091 625 Gene3D Protein tyrosine phosphatase superfamily 88 257 IPR029021 -
Cone13ag1091 625 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 178 235 IPR000387 GO:0016311(InterPro)
Cone13ag1091 625 MobiDBLite consensus disorder prediction 426 464 - -
Cone13ag1091 625 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 111 256 IPR029021 -
Cone13ag1091 625 Gene3D Severin 283 366 IPR029006 -
Cone13ag1091 625 MobiDBLite consensus disorder prediction 544 582 - -
Cone13ag1091 625 SUPERFAMILY Actin depolymerizing proteins 260 361 - -
Cone13ag1091 625 CDD DSP 116 250 - -
Cone13ag1091 625 ProSitePatterns Tyrosine specific protein phosphatases active site. 199 209 IPR016130 GO:0016311(InterPro)
Cone13ag1091 625 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1091 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0005 Cone-Chr10:57954 Cone13ag1091 Cone-Chr13:8834505 3.45E-08 dispersed
Cone13ag1091 Cone-Chr13:8834505 Cone5ag0297 Cone-Chr5:1254999 2.58E-182 dispersed
Cone12ag0682 Cone-Chr12:6241913 Cone13ag1091 Cone-Chr13:8834505 7.68E-175 wgd
Cone13ag1091 Cone-Chr13:8834505 Cone19ag1080 Cone-Chr19:7866960 0 wgd
Cone13ag1091 Cone-Chr13:8834505 Cone8ag0701 Cone-Chr8:7076874 1.10E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37