Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1093 ATGGCGAGTGGCGGCGACGAAGACCTTGATGCAGTGCTCAGCGATGTGGAAGGTGATGATCCGGTGCCGATCGTGATAAAGAGTCCAGGTCCGGAAGAAATCACGCCGGAGAGGTTTAGAGAGCTTCTCGCTGAGCTTGATCGTGAGCGGCAAGCAAGAGAGTTGGCTGAGAATTCGAAATCCGAATTGCAAGTCTCATTTGGTCGATTGAAAGCCCTAACTCATGAGGCTCTTAAGAAGCGTGATGAGTGTTCAAGGCAACGAGACGATGCTTTAAGAGATAAGGAAGAGGCTTTGAAATCAAACGAGAAGGCCTTGGTTGATTTAGCCGAGGCAAATAGATTGAAAGATGAGGTTTCTCAGCAACTGGATGAGTTGAGATCGGAAATGGGAACTTCATCGCATATGTTAGTGACTGGAATTGATAAGATTTCTGGAAAAGTGAGTAATTTCAAGAGTTTTATGCCAGGTGGATTGCCTAGATCACAGAAGTACACAGGGTTGCCTGCAGTTGCATATGGAGTTATTAAGAGGACAAATGAGATTGTGGAAGACCTTGTCCGGCAAATCGATGCAACAGTCAAGTCGAGAAATGAAACTAGGGAACAGATGGAGCAGAGGAATTATGAGATTGCCATCGAGGTGTCTCAGCTTGAGGCCACCATTAGTGGGTTGAGGGAAGAGGTCGCCAAGAATACTACTGTTATTGACAACTTGGAGAAGGCGATCGCCGAAAAGGACGGGAAGATATCTGAAATTGATGGTGAGATGACTGAGAAATTAAAGAATGTGGAGAGTGAGAATTCCCAGCTGAGACAGCTAGTCGAGGAGTATGATGATAAGCTAAGAAGCTTGGAGGAGAAGATGGAATCTCAAAGGCCTTTACTGATTGATCAATCAAGTCTTGTTTCAAAGATCCACGACCGGATTTATGAAGTTATTAAGATGGTTGATGCTGGTAATGTAGATCACTCTGAGTTTTCTGAGTCCTTATTTCTGCCACAAGAAACGGACATGGAGGAGAATATTCGTGCATCTTTAGCAGGGATGGAATCTATTTATGAGTTGGTCAGAGTTGTTAAGGAGAAAACAAGAGATTTGATAGAGGAGAAGATACGAGAGATCAAGGGTTTAGATGAAACGGTGGCCCAGTTGGGACATGAGAAAGAACAAATTGGATATTTGCTAAGGAGTGCTTTGTCAAATAGGGTAACAAGTGATCCATCTTCGAAAACAAGTCAATTGTTTCAATATGCAGAAAATGGGTTAAAAGAGGCTGGGGTAGATTTCAAATTTAGTAAGCTTCTTGGGGATGAAATGGTATCCAGTGACAAAGATACAGAGGAGGATGAAGTTTACACATTGGCTAGTGCTTTGGAGAATATCGTGAAGGCATCTCAGCTTGAGATCATTGAACTGCAGCATTTTCTGGAGGATGTAAGAGTCAAGTTTACTTAA 1458 43.14 MASGGDEDLDAVLSDVEGDDPVPIVIKSPGPEEITPERFRELLAELDRERQARELAENSKSELQVSFGRLKALTHEALKKRDECSRQRDDALRDKEEALKSNEKALVDLAEANRLKDEVSQQLDELRSEMGTSSHMLVTGIDKISGKVSNFKSFMPGGLPRSQKYTGLPAVAYGVIKRTNEIVEDLVRQIDATVKSRNETREQMEQRNYEIAIEVSQLEATISGLREEVAKNTTVIDNLEKAIAEKDGKISEIDGEMTEKLKNVESENSQLRQLVEEYDDKLRSLEEKMESQRPLLIDQSSLVSKIHDRIYEVIKMVDAGNVDHSEFSESLFLPQETDMEENIRASLAGMESIYELVRVVKEKTRDLIEEKIREIKGLDETVAQLGHEKEQIGYLLRSALSNRVTSDPSSKTSQLFQYAENGLKEAGVDFKFSKLLGDEMVSSDKDTEEDEVYTLASALENIVKASQLEIIELQHFLEDVRVKFT 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8846710 8850106 - Conep13aG0112500.1 Cone13ag1093 451480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1093 485 Coils Coil 361 388 - -
Cone13ag1093 485 Coils Coil 236 291 - -
Cone13ag1093 485 MobiDBLite consensus disorder prediction 1 33 - -
Cone13ag1093 485 Coils Coil 39 59 - -
Cone13ag1093 485 Gene3D - 177 294 - -
Cone13ag1093 485 PANTHER OS08G0559800 PROTEIN 1 482 IPR040300 -
Cone13ag1093 485 Coils Coil 92 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1093 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1093 Cone-Chr13:8846710 Cone15ag0079 Cone-Chr15:427257 3.74E-06 dispersed
Cone19ag1082 Cone-Chr19:7876948 Cone13ag1093 Cone-Chr13:8846710 8.14E-125 transposed
Cone13ag1093 Cone-Chr13:8846710 Cone19ag1081 Cone-Chr19:7874669 2.66E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g613 . . . . . . . Bma15g00227 . Cmo18g00727 . Cma18g00735 . Car18g00683 . Cpe09g00554 . . . . . . . . . . . . . . . Cone13ag1093 Cone19ag1081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009045 1 0 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 34