Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1098 ATGGACGCCACAACAAGCGGGACCCCCTCTATACAACAATACCACAACATAACCGATCAGTCAATGACAACTACTATTGTAACAACCCCTATGGTCCCACCATTTCCTAGACAGACAAGACATTGCTTTGGGGACTCAATCCCGGGCGAATTCCCCTTGGCTGCCAATCCCTCCATAGTCCTTCATGTCCTCACAGGATGTCACTTGGAACCTCAGGACCTGGCCAAATTAGAGGCAACATGTTCGTTTTTTAGACACCCTGCAAATTTCACTCCGGACTATGAGTTGTCCCTTTCGGAGATTGCCGCATTGGACATGTGTCAGAAGAGGGCGATATTTATGCCTATGACCCTGGAGGAGCGTTGTGAATTGAAACAAAAATGTGGGGGCTCATGGAAACTCGTCTTGAGGTTCTTGCTTGCCGGAGAAGCTTGTTGCCGGAGGGAGAAATCTCAGGCCATAGCAGGGCCCGGTCACAGCATTGCCGTGACTTCAAAAGGAGACGTTTACTCATTCGGGTCTAATAACTCTGGACAGCTCGGACAAGGAACCACTGAAGAGGAATGGCGGCCCTGCCAAATCAGGTCTTTGCATGGGATTAGAATTATCCAAGCAGCTGCAGGGGCTGGGAGAACAATGTTAATAAGTGATGCCGGAAGGGTTTATGCATTTGGCAAGGACTCGTTTGGAGAAGCAGAGTATGGAGTTCAGGGAGCTAAGATGACTACTACTCCTCAGTTGGTCCAATCCTTGAAGAATATATTTGTGGTGCAAGCTGCAATAGGGAACTTCTTCACGGCAGTATTGTCAAGAGAGGGCCGGGTTTACACTTTTTCTTGGGGTGTTGATGCGAAACTTGGTCACCAGACTGAATCAAACGATGTGGAGCCTCATCCCTTGTTGGGTGCACTTGAGAACATACCGGTCGTGCAAATTGCAGCCGGTTATTGCTACCTTCTAGCTCTGGCTTGTCAACCTACTGGCATGTCGGTATACTCTGTTGGCTGTGGACTGGGCGGAAAGCTGGGGCACGGCTCAAGAACTGATGAGAAGTACCCACGATTGATCGAACAGTTTCAGAACCTGAACCTTCAACCAATGGTGGTTGCAGCCGGTGCATGGCATGCAGCTGTGGTGGGCCGTGATGGTCGAGTCTGCACCTGGGGGTGGGGCCGCTATGGGTGCTTGGGCCACGGAAATGAAGATTGTGAATCCGTTCCTAAGGTGGTTGAAGGACTAAGAGATGTTAGAGCTGTCCATGTGGCCACAGGGGATTACACGACTTTTGTGGTCACAAATGATGGGGATGTTTATTCTTTCGGGTGTGGAGAATCCGCTAGTCTAGGACACAATACAATTGCTGATGGACAGGGAAATAGACATGCAAATGTTTTAAGCCCGAAGCTCGTCTTCTCGCTAAAGGAAATTAATGAGCGGGTGGTACAGATCAGCCTCACTAATTCAATTTACTGGAATGCTCACACTTTTGCTCTGACCGAATCGGGCACGTTATTTGCATTTGGGGCAGGAGATAAAGGGCAGCTGGGCATAGAGCTTGCTGCGAATCAAACCGAAAGGGGAAATCCCGAGCGGGTTGATGTTGATCTAAGTTAA 1614 49.32 MDATTSGTPSIQQYHNITDQSMTTTIVTTPMVPPFPRQTRHCFGDSIPGEFPLAANPSIVLHVLTGCHLEPQDLAKLEATCSFFRHPANFTPDYELSLSEIAALDMCQKRAIFMPMTLEERCELKQKCGGSWKLVLRFLLAGEACCRREKSQAIAGPGHSIAVTSKGDVYSFGSNNSGQLGQGTTEEEWRPCQIRSLHGIRIIQAAAGAGRTMLISDAGRVYAFGKDSFGEAEYGVQGAKMTTTPQLVQSLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGVDAKLGHQTESNDVEPHPLLGALENIPVVQIAAGYCYLLALACQPTGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFQNLNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEDCESVPKVVEGLRDVRAVHVATGDYTTFVVTNDGDVYSFGCGESASLGHNTIADGQGNRHANVLSPKLVFSLKEINERVVQISLTNSIYWNAHTFALTESGTLFAFGAGDKGQLGIELAANQTERGNPERVDVDLS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8881444 8885386 - Conep13aG0113000.1 Cone13ag1098 451485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1098 537 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 167 218 IPR000408 -
Cone13ag1098 537 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 369 379 IPR000408 -
Cone13ag1098 537 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 228 532 IPR051210 -
Cone13ag1098 537 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 537 IPR000408 -
Cone13ag1098 537 Pfam Regulator of chromosome condensation (RCC1) repeat 166 215 IPR000408 -
Cone13ag1098 537 Pfam Regulator of chromosome condensation (RCC1) repeat 382 431 IPR000408 -
Cone13ag1098 537 Pfam Regulator of chromosome condensation (RCC1) repeat 219 269 IPR000408 -
Cone13ag1098 537 Pfam Regulator of chromosome condensation (RCC1) repeat 330 379 IPR000408 -
Cone13ag1098 537 Pfam Regulator of chromosome condensation (RCC1) repeat 434 484 IPR000408 -
Cone13ag1098 537 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 501 IPR000408 -
Cone13ag1098 537 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 382 IPR000408 -
Cone13ag1098 537 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 219 272 IPR000408 -
Cone13ag1098 537 PRINTS Chromosome condensation regulator RCC1 signature 275 289 IPR000408 -
Cone13ag1098 537 PRINTS Chromosome condensation regulator RCC1 signature 169 185 IPR000408 -
Cone13ag1098 537 PRINTS Chromosome condensation regulator RCC1 signature 259 275 IPR000408 -
Cone13ag1098 537 PRINTS Chromosome condensation regulator RCC1 signature 219 235 IPR000408 -
Cone13ag1098 537 PRINTS Chromosome condensation regulator RCC1 signature 430 451 IPR000408 -
Cone13ag1098 537 PRINTS Chromosome condensation regulator RCC1 signature 372 390 IPR000408 -
Cone13ag1098 537 PRINTS Chromosome condensation regulator RCC1 signature 150 163 IPR000408 -
Cone13ag1098 537 SUPERFAMILY RCC1/BLIP-II 151 485 IPR009091 -
Cone13ag1098 537 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 434 IPR000408 -
Cone13ag1098 537 Gene3D - 148 324 IPR009091 -
Cone13ag1098 537 Gene3D - 325 536 IPR009091 -
Cone13ag1098 537 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 273 325 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1098 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1098 Cone-Chr13:8881444 Cone6ag1247 Cone-Chr6:9942555 2.83E-33 dispersed
Cone13ag1098 Cone-Chr13:8881444 Cone19ag1088 Cone-Chr19:7916613 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44