Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1107 ATGCTGCAACAAGAACAGGCTTCCAAGTCTTCCTTCAGAGAGTCTATCAAAGCTCTTGAAGCCGATATACAACATGCCAATAGTTTGGCAGCGGCTCTGCCAAGAGATTACTGTGGTGATTGTATACAGATGAGATTGAGTTACAGCCCCTTTGCACCATTTTTCCTTTATTTGATAGAATGGATGGATATTGGTTGTACAGACACTCTGCCAAGTTTTTTAGGCCTTCTCCATGTTCTCGTTTACAAGGTGTATGTGGATGGAATGCCCTTGATTTCATCAAAAGAAAGGAAAGCCACTCTAAGGGAGTTTTATGCTGTGATATACCCTTCGCTAAGGCAACTTGAGGGGGAGCTTGTGGGGTTGGAAGATAATAGTAATAATAGAAGCCAATGTAGGAAGAGAGTGGAGGATCATCAAATGAAAGCTTTTAATAAAGATCAAGAAAGGGATGATGAGTGCGGGATATGTATGGAAAGCTGCACTAAAATGGTGTTGCCCCATTGTAGCCATTCCATGTGCATTACCTGCTTCCGTGACTGGAGACATTCTGGACCACACATGGAGTAG 570 42.81 MLQQEQASKSSFRESIKALEADIQHANSLAAALPRDYCGDCIQMRLSYSPFAPFFLYLIEWMDIGCTDTLPSFLGLLHVLVYKVYVDGMPLISSKERKATLREFYAVIYPSLRQLEGELVGLEDNSNNRSQCRKRVEDHQMKAFNKDQERDDECGICMESCTKMVLPHCSHSMCITCFRDWRHSGPHME 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8910793 8912438 + Conep13aG0113900.1 Cone13ag1107 451494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1107 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 187 IPR013083 -
Cone13ag1107 189 SUPERFAMILY RING/U-box 138 186 - -
Cone13ag1107 189 Coils Coil 2 22 - -
Cone13ag1107 189 PANTHER RING FINGER PROTEIN 41, 151 9 181 - GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1107 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1107 Cone-Chr13:8910793 Cone6ag1027 Cone-Chr6:5773863 5.47E-61 dispersed
Cone13ag1107 Cone-Chr13:8910793 Cone16ag0047 Cone-Chr16:256358 2.14E-49 wgd
Cone13ag1107 Cone-Chr13:8910793 Cone19ag1095 Cone-Chr19:7945802 1.21E-43 wgd
Cone13ag1107 Cone-Chr13:8910793 Cone8ag0715 Cone-Chr8:7185843 4.01E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1118 . . . . . . Bma14g01877 . . . . . . . . . Cpe01g01591 Bhi07g01857 . . . . . . Cla05g02628 Cam05g2819 Cec05g2854 Cco05g2887 Clacu05g2822 Cmu05g2670 Cre05g2787 Cone13ag1107 Cone19ag1095 Cone8ag0715 . Lsi04g00643 . . Cme10g00620 . . . . . . . . . . . Cma04g01807 . . . . . . . . . . . . . . . . . . . . . . .
Vvi8g890 . . . . Bpe04g01277 . Bma04g01326 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1107 Cone19ag1388 . . . Cme04g02716 . Blo09g00274 Bda03g01405 . . . . . . . . . . . Car14g00053 . . Bhi11g01847 Tan08g2125 . Lac10g3210 . . . Cla10g02087 Cam10g2165 Cec10g2203 Cco10g2189 Clacu10g2168 Cmu10g2908 Cre10g2309 Lsi03g02208 Csa03g03078 Chy04g02248 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008688 0 4 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34