Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1108 ATGGCAAATGGGTGGCTGTCTCCTCCAAACTGTGCGTTTCCGGCAGGTCTCCGAGTTCTCATCGTTGACGATGATCCGACATGGCTCAAAATTCTTGAAAAGATGCTCAAAAAGTGCTCTTATGAAGTAACTATATGCTGTTTGGCAAGAGAGGCTCTAACCTTACTCCGAGAAACAAAAGACGGTTACGACATTGTAATCAGTGATGTAAACATGCCCGACATGGATGGTTTTAAGCTTCTCGAACTTGTCGGACTCGAAATGGATCTTCCTGTCATAATGATGTCAGTTGATGGAGAAACGAGCAGGGTGATGAAAGGAGTCCAACACGGAGCATGCGATTATCTTCTCAAACCGATAAGAATGAAAGAACTCAGAAACATATGGCAGCATGTTTTCCGGAAGAAGAGACATGATGTAAGAGATTTTGAAAGAATTGAAGGTTTTCAAATGATAACAAGTGCTATATCGAATCAGTTGAATAAGGGACCATTTCTTCAAATAGAAGAATCGATTTCAACGAAGAAAAGGAAATATTTTGATAAGCAGGACGATGGAGAATTTTCTGATGCTTCTTCTATGAAGAAAGCTCGAGTGGTTTGGACTGTAGACCTTCATCAGAAGTTTGTAAGAGCAGTAAACCAGATTGGACTAGACAAAGCAGGCCCGAAGAAAATACGCGATCTAATGAATGTCCCACAATTGACGAGAGAAAATGTGGCTAGCCACTTGCAGAAGTACCGTCTCTACTTGAGTAGGCTGCAAAAAGAAAACAACCCCGAATCTTCTTTTCCAGAAGATTTATGTGCTAGAGAAAACATATATCCCAGCATTGTATCACATTGTAATCAGTCCATGTTAGAGCCGGAAAGAGCTCCAACTCGAGGTGTTCATGATCCTAAGAAGACATGGAATCCAACGATAGAATTCAATCCTCCTGTTCGATCAGTCAATCCTTATATCAAAACAGAGGAATTAATCCCAGGATCACTGGAAAATAGCTTCAACCAGCTTCAAGTCGACAAACTACAACCGGTTTCAATCATCGAGTCCGGAACTCCCATAAAAGAGGATCCGGAAGCCCCAGCTTTCAATCTGTGCTGCATAACTGATTTGGAAGGTGGGCTATCATCATTCTCTACTCTCGAAGATCTTCAGGGCAATGGTTATGATAATACGAAGAATCTTCCACATGGGAATTATATAGAATTTCCCGAGACCTTTGATCCGCGAATGGTTATGGATTTTCCCAATCAATTTGGTTATGAGTATTCTTCTTATGACATGGTGGACTATTCAGTGAAAGATGAAGGTCTGTCATTGTATGACAATTTTGTATAA 1341 40.87 MANGWLSPPNCAFPAGLRVLIVDDDPTWLKILEKMLKKCSYEVTICCLAREALTLLRETKDGYDIVISDVNMPDMDGFKLLELVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKRHDVRDFERIEGFQMITSAISNQLNKGPFLQIEESISTKKRKYFDKQDDGEFSDASSMKKARVVWTVDLHQKFVRAVNQIGLDKAGPKKIRDLMNVPQLTRENVASHLQKYRLYLSRLQKENNPESSFPEDLCARENIYPSIVSHCNQSMLEPERAPTRGVHDPKKTWNPTIEFNPPVRSVNPYIKTEELIPGSLENSFNQLQVDKLQPVSIIESGTPIKEDPEAPAFNLCCITDLEGGLSSFSTLEDLQGNGYDNTKNLPHGNYIEFPETFDPRMVMDFPNQFGYEYSSYDMVDYSVKDEGLSLYDNFV 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8915265 8917358 + Conep13aG0114000.1 Cone13ag1108 451495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1108 446 SUPERFAMILY Homeodomain-like 194 253 IPR009057 -
Cone13ag1108 446 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 288 IPR045279 GO:0009736(InterPro)
Cone13ag1108 446 Pfam Myb-like DNA-binding domain 198 248 IPR001005 -
Cone13ag1108 446 Gene3D - 194 255 - -
Cone13ag1108 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 252 IPR017930 -
Cone13ag1108 446 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Cone13ag1108 446 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
Cone13ag1108 446 NCBIfam myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677(InterPro)
Cone13ag1108 446 FunFam Two-component response regulator 192 255 - -
Cone13ag1108 446 Gene3D - 17 193 - -
Cone13ag1108 446 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Cone13ag1108 446 SUPERFAMILY CheY-like 16 161 IPR011006 -
Cone13ag1108 446 CDD REC_typeB_ARR-like 19 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1108 Cone-Chr13:8915265 Cone19ag0738 Cone-Chr19:6052160 1.72E-85 dispersed
Cone13ag1108 Cone-Chr13:8915265 Cone19ag1096 Cone-Chr19:7950857 6.57E-276 wgd
Cone13ag1108 Cone-Chr13:8915265 Cone8ag0716 Cone-Chr8:7215291 9.92E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44659 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1108 K14491 - csv:101204370 410.609