Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag1108 | ATGGCAAATGGGTGGCTGTCTCCTCCAAACTGTGCGTTTCCGGCAGGTCTCCGAGTTCTCATCGTTGACGATGATCCGACATGGCTCAAAATTCTTGAAAAGATGCTCAAAAAGTGCTCTTATGAAGTAACTATATGCTGTTTGGCAAGAGAGGCTCTAACCTTACTCCGAGAAACAAAAGACGGTTACGACATTGTAATCAGTGATGTAAACATGCCCGACATGGATGGTTTTAAGCTTCTCGAACTTGTCGGACTCGAAATGGATCTTCCTGTCATAATGATGTCAGTTGATGGAGAAACGAGCAGGGTGATGAAAGGAGTCCAACACGGAGCATGCGATTATCTTCTCAAACCGATAAGAATGAAAGAACTCAGAAACATATGGCAGCATGTTTTCCGGAAGAAGAGACATGATGTAAGAGATTTTGAAAGAATTGAAGGTTTTCAAATGATAACAAGTGCTATATCGAATCAGTTGAATAAGGGACCATTTCTTCAAATAGAAGAATCGATTTCAACGAAGAAAAGGAAATATTTTGATAAGCAGGACGATGGAGAATTTTCTGATGCTTCTTCTATGAAGAAAGCTCGAGTGGTTTGGACTGTAGACCTTCATCAGAAGTTTGTAAGAGCAGTAAACCAGATTGGACTAGACAAAGCAGGCCCGAAGAAAATACGCGATCTAATGAATGTCCCACAATTGACGAGAGAAAATGTGGCTAGCCACTTGCAGAAGTACCGTCTCTACTTGAGTAGGCTGCAAAAAGAAAACAACCCCGAATCTTCTTTTCCAGAAGATTTATGTGCTAGAGAAAACATATATCCCAGCATTGTATCACATTGTAATCAGTCCATGTTAGAGCCGGAAAGAGCTCCAACTCGAGGTGTTCATGATCCTAAGAAGACATGGAATCCAACGATAGAATTCAATCCTCCTGTTCGATCAGTCAATCCTTATATCAAAACAGAGGAATTAATCCCAGGATCACTGGAAAATAGCTTCAACCAGCTTCAAGTCGACAAACTACAACCGGTTTCAATCATCGAGTCCGGAACTCCCATAAAAGAGGATCCGGAAGCCCCAGCTTTCAATCTGTGCTGCATAACTGATTTGGAAGGTGGGCTATCATCATTCTCTACTCTCGAAGATCTTCAGGGCAATGGTTATGATAATACGAAGAATCTTCCACATGGGAATTATATAGAATTTCCCGAGACCTTTGATCCGCGAATGGTTATGGATTTTCCCAATCAATTTGGTTATGAGTATTCTTCTTATGACATGGTGGACTATTCAGTGAAAGATGAAGGTCTGTCATTGTATGACAATTTTGTATAA | 1341 | 40.87 | MANGWLSPPNCAFPAGLRVLIVDDDPTWLKILEKMLKKCSYEVTICCLAREALTLLRETKDGYDIVISDVNMPDMDGFKLLELVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKRHDVRDFERIEGFQMITSAISNQLNKGPFLQIEESISTKKRKYFDKQDDGEFSDASSMKKARVVWTVDLHQKFVRAVNQIGLDKAGPKKIRDLMNVPQLTRENVASHLQKYRLYLSRLQKENNPESSFPEDLCARENIYPSIVSHCNQSMLEPERAPTRGVHDPKKTWNPTIEFNPPVRSVNPYIKTEELIPGSLENSFNQLQVDKLQPVSIIESGTPIKEDPEAPAFNLCCITDLEGGLSSFSTLEDLQGNGYDNTKNLPHGNYIEFPETFDPRMVMDFPNQFGYEYSSYDMVDYSVKDEGLSLYDNFV | 446 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8915265 | 8917358 | + | Conep13aG0114000.1 | Cone13ag1108 | 451495 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag1108 | 446 | SUPERFAMILY | Homeodomain-like | 194 | 253 | IPR009057 | - | |
Cone13ag1108 | 446 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 16 | 288 | IPR045279 | GO:0009736(InterPro) | |
Cone13ag1108 | 446 | Pfam | Myb-like DNA-binding domain | 198 | 248 | IPR001005 | - | |
Cone13ag1108 | 446 | Gene3D | - | 194 | 255 | - | - | |
Cone13ag1108 | 446 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 193 | 252 | IPR017930 | - | |
Cone13ag1108 | 446 | SMART | REC_2 | 17 | 129 | IPR001789 | GO:0000160(InterPro) | |
Cone13ag1108 | 446 | Pfam | Response regulator receiver domain | 19 | 128 | IPR001789 | GO:0000160(InterPro) | |
Cone13ag1108 | 446 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 196 | 249 | IPR006447 | GO:0003677(InterPro) | |
Cone13ag1108 | 446 | FunFam | Two-component response regulator | 192 | 255 | - | - | |
Cone13ag1108 | 446 | Gene3D | - | 17 | 193 | - | - | |
Cone13ag1108 | 446 | ProSiteProfiles | Response regulatory domain profile. | 18 | 133 | IPR001789 | GO:0000160(InterPro) | |
Cone13ag1108 | 446 | SUPERFAMILY | CheY-like | 16 | 161 | IPR011006 | - | |
Cone13ag1108 | 446 | CDD | REC_typeB_ARR-like | 19 | 133 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag1108 | Cone-Chr13:8915265 | Cone19ag0738 | Cone-Chr19:6052160 | 1.72E-85 | dispersed | |
Cone13ag1108 | Cone-Chr13:8915265 | Cone19ag1096 | Cone-Chr19:7950857 | 6.57E-276 | wgd | |
Cone13ag1108 | Cone-Chr13:8915265 | Cone8ag0716 | Cone-Chr8:7215291 | 9.92E-133 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44659 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag1108 | K14491 | - | csv:101204370 | 410.609 |