Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag1136 | ATGGATATCACGGAGGTAGAAGAAAATTTCTTTGCAGCCAGTGATGCCAAGCTACATGGAGGAATGTGCAAGGCACTTTCTGCAATACATTGCAAAGTACAGTCGATTTTCCCTTCTTTGGAAGCAGTACGTCCAGGGAGCAAATCCGGCATTATGGCGTTATGTTCATTGCATATGGCACTTGAGAAGATCAATAATGTTCTTCAACATTGCTCAGAAAGTAGTAAACTCTACTTGGCTATAACTTCTGAGGCTGTACTCCTAAAATTTGAGAAGGCAAAATGTTTTCTTCAAGATAGTCTAAGACGTGTTCAGGATATCGTCTCACAATCAGTTGGTTCTCAGATTGAAGAGGTACTGGCTGAGATTGAAGAAACTGTGATCTCTCTGGATCCACAAGAGAAGCAAGTTGGTGACGATCTTATTTCCTTGATCCAGCAAGGGAATGATTTTAACAACTCTACTGACTGTAATGAGCTAGAGTCCTTCCACCAGGCTGCTACTAAACTCGGAGTAACCTCCTCGAGAACAGCTCTTACTGAGAGAAGGGCTCTCAAGAAACTCATAGAACGAGCTCGAGCAGAAGAAGACAAGAGGAAAGAATCAATTGTGGCTTACCTCTTACATCTCATGAGGAAATACTCCAAGCAATTTAGGACTGAAATACTCGACGAGAATGAACAGAGTTCTGCCCCTTGTTCTCCCACTCTTCAGGGCGCAAAAGAGGACAGTAGGCCCGATTTCAATATCCGTGCTTTTGAACATCAGCTTTCAAAGCTTAGTTCTATAAACTTTAAAACAAATACTAGAAGATCAAGGCAGCTTTCCCTGCCCCTGCCCCTGCCGCCTGAGGAGCTGAGGTGTCCAATATCACTTCAGCTTATGTTTGATCCAGTCATCATAGCTTCCGGGCAAACATATGAAAGGATCTGCATTGAGAAGTGGCTCAGTGATGGGCATAATACCTGCCCGAAAACCCAGCAGAAACTCTCTTATCTTTCTTTGACCCCTAATTACTGTGTTAAGGGTCTCGTTACTAATTGGTGTGAACAGAATGGAGTCTCTGTTCCTGATGGGCCCCCAGATTTTCTCGACCTCAACTATTGGAGACTTTCATTGTCTGAATCCAAGACTGCTAATTCAAAGTCATTGGACAGTGTTGGCGCCTGCAAGGTGAAGAGTGATAAAGTGGTTCCATTAGAGGAGAGTGGTATTACTGAGGAGGTCCAAGGAAACGAAAATGAACCAGATAATCATACTGCATCTGTACAGGAGGAAAAACCTGAACCGGATAATGTGGTCCCAAGTTATATGAATTTTCTTGATGCTCTTAATGAAGGAGGAGAGTTGGGGAAAAAGTGTAAGCTGGTGGAGAAGATAAGGTTTGTGCTGAAGGATGATGAGGAGGCAAGGGTTTTTATGGGAGCCAATGGCTTTGTGGAAGCACTGTTGCAGTTTTTGACTTCAGCTGTGCGTGAAGGGAATACAAAGGCTCAGGAGAGTGGAGCCATGGCTCTCTTCAACCTTGCTGTTAACAATAACAGAAACAAGGAGTTGATGCTAGAAGCTGGATTGATCCCACTGTTAGAGGAAATGATCTCGAACTCCGATTCACATGGATCCGCAGCCGCACTATACATGAACCTCTCTTGTCTCGAAGCAGCCAAACTAATCATCGGATCCAGTGAAGCCGTCCCTTTCATAACTCGACTTCTTACTGATAATTCTGACCCCCAATCAAAGCTCGACTCCCTCCACGCCCTCTACCATCTCTCCACCATTCCTTCCAATATCCCACATCTTCTCTCCTCTAACGTTGTCTCTGGCCTTCTGTCTCTTCTTGCTCCTGAAAATAACCGCCATTCATGGACTGAGAAATCCATAGCCGTCTTGATCAACCTGGCCTCAAGTCAACCTGGAAGAGATGAACTGATAACGGACACAGGTGTTATTGGCCGGCTTGCTACGGTAGTGGACAGTGGGGAAGCTATCGAACAGGAGCAAGCTGTGTCTTGTCTTTTGATTTTGTGTAATCAGAATGAGAAATGCAGTGATATGGTCTTGCAGGAAGGGGTGATTCCTGGATTGGTGTCGATGTCTGTTAATGGGACCTCTAGAGGGAAAGAGAAGGCTCGTAGGCTTTTGATGTTGTTCAGGGAGCAGAGGCAAAGAGAGCAACTACAACCACAACAACGGTCAGTGGATGATAATAGTTGTAATTATCGAGTTGAACGCCGTGAGAATCCTTTTGTTGTTGATTCTGATACAAGGCCGTTGTCTAAATCTACTTCTAGAAGGACATTAGGGAGAGCTTTTAGTTTTCTGAAGAAGAGCAAGAGCTACTCATTTTACCGGTTCTGA | 2361 | 44.47 | MDITEVEENFFAASDAKLHGGMCKALSAIHCKVQSIFPSLEAVRPGSKSGIMALCSLHMALEKINNVLQHCSESSKLYLAITSEAVLLKFEKAKCFLQDSLRRVQDIVSQSVGSQIEEVLAEIEETVISLDPQEKQVGDDLISLIQQGNDFNNSTDCNELESFHQAATKLGVTSSRTALTERRALKKLIERARAEEDKRKESIVAYLLHLMRKYSKQFRTEILDENEQSSAPCSPTLQGAKEDSRPDFNIRAFEHQLSKLSSINFKTNTRRSRQLSLPLPLPPEELRCPISLQLMFDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSYLSLTPNYCVKGLVTNWCEQNGVSVPDGPPDFLDLNYWRLSLSESKTANSKSLDSVGACKVKSDKVVPLEESGITEEVQGNENEPDNHTASVQEEKPEPDNVVPSYMNFLDALNEGGELGKKCKLVEKIRFVLKDDEEARVFMGANGFVEALLQFLTSAVREGNTKAQESGAMALFNLAVNNNRNKELMLEAGLIPLLEEMISNSDSHGSAAALYMNLSCLEAAKLIIGSSEAVPFITRLLTDNSDPQSKLDSLHALYHLSTIPSNIPHLLSSNVVSGLLSLLAPENNRHSWTEKSIAVLINLASSQPGRDELITDTGVIGRLATVVDSGEAIEQEQAVSCLLILCNQNEKCSDMVLQEGVIPGLVSMSVNGTSRGKEKARRLLMLFREQRQREQLQPQQRSVDDNSCNYRVERRENPFVVDSDTRPLSKSTSRRTLGRAFSFLKKSKSYSFYRF | 786 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 9000613 | 9004712 | - | Conep13aG0116800.1 | Cone13ag1136 | 451523 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag1136 | 786 | Gene3D | - | 413 | 732 | IPR011989 | - | |
Cone13ag1136 | 786 | Coils | Coil | 175 | 195 | - | - | |
Cone13ag1136 | 786 | SUPERFAMILY | ARM repeat | 448 | 718 | IPR016024 | - | |
Cone13ag1136 | 786 | CDD | RING-Ubox_PUB | 287 | 335 | IPR045210 | - | |
Cone13ag1136 | 786 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 478 | 524 | IPR000225 | GO:0005515(InterPro) | |
Cone13ag1136 | 786 | Pfam | U-box domain | 283 | 352 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone13ag1136 | 786 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 355 | IPR013083 | - | |
Cone13ag1136 | 786 | FunFam | RING-type E3 ubiquitin transferase | 281 | 355 | - | - | |
Cone13ag1136 | 786 | SMART | Ubox_2 | 285 | 348 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone13ag1136 | 786 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 605 | 649 | IPR000225 | GO:0005515(InterPro) | |
Cone13ag1136 | 786 | MobiDBLite | consensus disorder prediction | 403 | 432 | - | - | |
Cone13ag1136 | 786 | ProSiteProfiles | U-box domain profile. | 281 | 355 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone13ag1136 | 786 | PANTHER | U BOX DOMAIN-CONTAINING | 22 | 723 | - | - | |
Cone13ag1136 | 786 | SUPERFAMILY | RING/U-box | 272 | 358 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag1136 | Cone-Chr13:9000613 | Cone9ag1553 | Cone-Chr9:11266669 | 1.67E-83 | dispersed | |
Cone10ag0123 | Cone-Chr10:628654 | Cone13ag1136 | Cone-Chr13:9000613 | 5.56E-14 | wgd | |
Cone11ag1421 | Cone-Chr11:10164764 | Cone13ag1136 | Cone-Chr13:9000613 | 5.04E-13 | wgd | |
Cone12ag0712 | Cone-Chr12:6553517 | Cone13ag1136 | Cone-Chr13:9000613 | 0 | wgd | |
Cone13ag1136 | Cone-Chr13:9000613 | Cone18ag0170 | Cone-Chr18:886262 | 1.62E-13 | wgd | |
Cone13ag1136 | Cone-Chr13:9000613 | Cone19ag1117 | Cone-Chr19:8027342 | 0 | wgd | |
Cone13ag1136 | Cone-Chr13:9000613 | Cone5ag1317 | Cone-Chr5:7662685 | 8.94E-15 | wgd | |
Cone13ag1136 | Cone-Chr13:9000613 | Cone8ag0740 | Cone-Chr8:7457912 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag1136 | - | - | - | 0.0 |