Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1136 ATGGATATCACGGAGGTAGAAGAAAATTTCTTTGCAGCCAGTGATGCCAAGCTACATGGAGGAATGTGCAAGGCACTTTCTGCAATACATTGCAAAGTACAGTCGATTTTCCCTTCTTTGGAAGCAGTACGTCCAGGGAGCAAATCCGGCATTATGGCGTTATGTTCATTGCATATGGCACTTGAGAAGATCAATAATGTTCTTCAACATTGCTCAGAAAGTAGTAAACTCTACTTGGCTATAACTTCTGAGGCTGTACTCCTAAAATTTGAGAAGGCAAAATGTTTTCTTCAAGATAGTCTAAGACGTGTTCAGGATATCGTCTCACAATCAGTTGGTTCTCAGATTGAAGAGGTACTGGCTGAGATTGAAGAAACTGTGATCTCTCTGGATCCACAAGAGAAGCAAGTTGGTGACGATCTTATTTCCTTGATCCAGCAAGGGAATGATTTTAACAACTCTACTGACTGTAATGAGCTAGAGTCCTTCCACCAGGCTGCTACTAAACTCGGAGTAACCTCCTCGAGAACAGCTCTTACTGAGAGAAGGGCTCTCAAGAAACTCATAGAACGAGCTCGAGCAGAAGAAGACAAGAGGAAAGAATCAATTGTGGCTTACCTCTTACATCTCATGAGGAAATACTCCAAGCAATTTAGGACTGAAATACTCGACGAGAATGAACAGAGTTCTGCCCCTTGTTCTCCCACTCTTCAGGGCGCAAAAGAGGACAGTAGGCCCGATTTCAATATCCGTGCTTTTGAACATCAGCTTTCAAAGCTTAGTTCTATAAACTTTAAAACAAATACTAGAAGATCAAGGCAGCTTTCCCTGCCCCTGCCCCTGCCGCCTGAGGAGCTGAGGTGTCCAATATCACTTCAGCTTATGTTTGATCCAGTCATCATAGCTTCCGGGCAAACATATGAAAGGATCTGCATTGAGAAGTGGCTCAGTGATGGGCATAATACCTGCCCGAAAACCCAGCAGAAACTCTCTTATCTTTCTTTGACCCCTAATTACTGTGTTAAGGGTCTCGTTACTAATTGGTGTGAACAGAATGGAGTCTCTGTTCCTGATGGGCCCCCAGATTTTCTCGACCTCAACTATTGGAGACTTTCATTGTCTGAATCCAAGACTGCTAATTCAAAGTCATTGGACAGTGTTGGCGCCTGCAAGGTGAAGAGTGATAAAGTGGTTCCATTAGAGGAGAGTGGTATTACTGAGGAGGTCCAAGGAAACGAAAATGAACCAGATAATCATACTGCATCTGTACAGGAGGAAAAACCTGAACCGGATAATGTGGTCCCAAGTTATATGAATTTTCTTGATGCTCTTAATGAAGGAGGAGAGTTGGGGAAAAAGTGTAAGCTGGTGGAGAAGATAAGGTTTGTGCTGAAGGATGATGAGGAGGCAAGGGTTTTTATGGGAGCCAATGGCTTTGTGGAAGCACTGTTGCAGTTTTTGACTTCAGCTGTGCGTGAAGGGAATACAAAGGCTCAGGAGAGTGGAGCCATGGCTCTCTTCAACCTTGCTGTTAACAATAACAGAAACAAGGAGTTGATGCTAGAAGCTGGATTGATCCCACTGTTAGAGGAAATGATCTCGAACTCCGATTCACATGGATCCGCAGCCGCACTATACATGAACCTCTCTTGTCTCGAAGCAGCCAAACTAATCATCGGATCCAGTGAAGCCGTCCCTTTCATAACTCGACTTCTTACTGATAATTCTGACCCCCAATCAAAGCTCGACTCCCTCCACGCCCTCTACCATCTCTCCACCATTCCTTCCAATATCCCACATCTTCTCTCCTCTAACGTTGTCTCTGGCCTTCTGTCTCTTCTTGCTCCTGAAAATAACCGCCATTCATGGACTGAGAAATCCATAGCCGTCTTGATCAACCTGGCCTCAAGTCAACCTGGAAGAGATGAACTGATAACGGACACAGGTGTTATTGGCCGGCTTGCTACGGTAGTGGACAGTGGGGAAGCTATCGAACAGGAGCAAGCTGTGTCTTGTCTTTTGATTTTGTGTAATCAGAATGAGAAATGCAGTGATATGGTCTTGCAGGAAGGGGTGATTCCTGGATTGGTGTCGATGTCTGTTAATGGGACCTCTAGAGGGAAAGAGAAGGCTCGTAGGCTTTTGATGTTGTTCAGGGAGCAGAGGCAAAGAGAGCAACTACAACCACAACAACGGTCAGTGGATGATAATAGTTGTAATTATCGAGTTGAACGCCGTGAGAATCCTTTTGTTGTTGATTCTGATACAAGGCCGTTGTCTAAATCTACTTCTAGAAGGACATTAGGGAGAGCTTTTAGTTTTCTGAAGAAGAGCAAGAGCTACTCATTTTACCGGTTCTGA 2361 44.47 MDITEVEENFFAASDAKLHGGMCKALSAIHCKVQSIFPSLEAVRPGSKSGIMALCSLHMALEKINNVLQHCSESSKLYLAITSEAVLLKFEKAKCFLQDSLRRVQDIVSQSVGSQIEEVLAEIEETVISLDPQEKQVGDDLISLIQQGNDFNNSTDCNELESFHQAATKLGVTSSRTALTERRALKKLIERARAEEDKRKESIVAYLLHLMRKYSKQFRTEILDENEQSSAPCSPTLQGAKEDSRPDFNIRAFEHQLSKLSSINFKTNTRRSRQLSLPLPLPPEELRCPISLQLMFDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSYLSLTPNYCVKGLVTNWCEQNGVSVPDGPPDFLDLNYWRLSLSESKTANSKSLDSVGACKVKSDKVVPLEESGITEEVQGNENEPDNHTASVQEEKPEPDNVVPSYMNFLDALNEGGELGKKCKLVEKIRFVLKDDEEARVFMGANGFVEALLQFLTSAVREGNTKAQESGAMALFNLAVNNNRNKELMLEAGLIPLLEEMISNSDSHGSAAALYMNLSCLEAAKLIIGSSEAVPFITRLLTDNSDPQSKLDSLHALYHLSTIPSNIPHLLSSNVVSGLLSLLAPENNRHSWTEKSIAVLINLASSQPGRDELITDTGVIGRLATVVDSGEAIEQEQAVSCLLILCNQNEKCSDMVLQEGVIPGLVSMSVNGTSRGKEKARRLLMLFREQRQREQLQPQQRSVDDNSCNYRVERRENPFVVDSDTRPLSKSTSRRTLGRAFSFLKKSKSYSFYRF 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9000613 9004712 - Conep13aG0116800.1 Cone13ag1136 451523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1136 786 Gene3D - 413 732 IPR011989 -
Cone13ag1136 786 Coils Coil 175 195 - -
Cone13ag1136 786 SUPERFAMILY ARM repeat 448 718 IPR016024 -
Cone13ag1136 786 CDD RING-Ubox_PUB 287 335 IPR045210 -
Cone13ag1136 786 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 524 IPR000225 GO:0005515(InterPro)
Cone13ag1136 786 Pfam U-box domain 283 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone13ag1136 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Cone13ag1136 786 FunFam RING-type E3 ubiquitin transferase 281 355 - -
Cone13ag1136 786 SMART Ubox_2 285 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone13ag1136 786 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 605 649 IPR000225 GO:0005515(InterPro)
Cone13ag1136 786 MobiDBLite consensus disorder prediction 403 432 - -
Cone13ag1136 786 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone13ag1136 786 PANTHER U BOX DOMAIN-CONTAINING 22 723 - -
Cone13ag1136 786 SUPERFAMILY RING/U-box 272 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1136 Cone-Chr13:9000613 Cone9ag1553 Cone-Chr9:11266669 1.67E-83 dispersed
Cone10ag0123 Cone-Chr10:628654 Cone13ag1136 Cone-Chr13:9000613 5.56E-14 wgd
Cone11ag1421 Cone-Chr11:10164764 Cone13ag1136 Cone-Chr13:9000613 5.04E-13 wgd
Cone12ag0712 Cone-Chr12:6553517 Cone13ag1136 Cone-Chr13:9000613 0 wgd
Cone13ag1136 Cone-Chr13:9000613 Cone18ag0170 Cone-Chr18:886262 1.62E-13 wgd
Cone13ag1136 Cone-Chr13:9000613 Cone19ag1117 Cone-Chr19:8027342 0 wgd
Cone13ag1136 Cone-Chr13:9000613 Cone5ag1317 Cone-Chr5:7662685 8.94E-15 wgd
Cone13ag1136 Cone-Chr13:9000613 Cone8ag0740 Cone-Chr8:7457912 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1136 - - - 0.0