Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1137 ATGATGACGATGATGATAATGAGGAAGAAGAAGAACACGTTCTTCATCATGCTCAGATTACTTTTCTTCTTCTTCTTCTTCTTCCAATTTTTAATTACTAGTTTCGCTCTGACGCCTGACGGTCTCTCTCTCCTCTCTCTAAAATCAGCCGTTGATCAACCATACGACGCCTCAGTTTTCTCCGACTGGAACGAGGACGATGCCAACCCGTGCCACTGGACCGGCATTTCCTGCATGAACGTCACCACCTCTTCCGATCCTCGCGTCGTCGGAATCTCCATTGCCGGAAGGAATCTCCGGGGGTATCTCCCCTCAGAGCTCGGCTCTCTCTTCTACCTCCGGCGACTCAACCTCCACAGCAATAACTTCTACGGCTCCTTACCTACACAGCTCTTCAACGCCACCGCATTGCACAGCATCTTCCTCTACGGAAACAATCTCTCTGGCACTCTACCTCCTTCGATCTGCAACATCCCTAGGCTCCAAAACCTCGACCTTTCCAACAACTCTCTGTCCGAAACAATCCCTAAGGATATAAAGAATTGCAAGCAGTTGCAGCGGCTAAACCTCGCTCAGAATAAATTCACTGGCGAAATTCCGGACGGCGTTTGGTCTCAAATGGATAACTTAGTCCTACTCGATCTCTCTGCCAACAACTTCTCCGGACCAATTCCGGAAGATATAAGCGCTCTAAAATCACTTTCCGGCACACTCAATCTTTCTCATAATCATTTAACCGGTCAAATCCCGAAATCGCTCGGAGATTTGCCCGTAACCGTAAGTTTCGACCTCCGGAATAATAATCTGACCGGAGAAATACCTCAGACGGGGTCGTTTGTAAATCAAGGACCAACTGCCTTTCTAGACAATCCTCTATTATGCGGTTTTCCTCTCCAAAAACCGTGCAGGAATTCAGAACAGAGCTCGCCTCAAAGCCCGAATTCAACCACTGCTTACAACACCGCTCCGAAAAAGGGCTTAAGTCCTGGACTGATCATCCTCATATCAGTAGCTGATGCAGCAGGAGTCGCATTCATCGGACTCGTGATCGTTTACATATACTGGAAAAAGAAAGACGATACAAACGCATGTAGCTGTACAGGGAAAGGAAAATTCGGAGGGAATGAGAAAACTCATACCTGCTCCCTCTGTTCATTCCCTTGCATCAACGGATTCAGAAACGACGAGGAGGAGGGGGGAATGGAGGATTCTGAGCAGGCGGAGAGAGGGGGTGGAGAATTGGTGGCAATAGATAAGGGGTTTACGTTCGAGCTGGACGAGCTGCTTAGGGCATCTGCGTATGTTTTAGGGAAGAGTGGGTTTGGGATAGTGTATAAGGTGGTGCTGGGGAATGGGATTCCGGTGGCGGTTAGGCGGTTAGGGGAAGGCGGTGAGCAGAGGTATAAGGAGTTTGTCACTGAAGTGCAGGCGATAGGGAAAGTGAAGCATCCTAATGTCGTTAAATTGAGGGCTTATTACTGGGCTCCTGATGAGAAGCTTCTCATTTCTGATTTCATCTCTAATGGCAACTTGGCCTCCGCTCTTCGTGGACGAAGTGGTCAGCCATCAACAAATCTATCATGGTCAATAAGGCTAAAAATCGTGAAGGGTACAGCTCGTGGACTGGCTTACCTCCACGAATGCAGTCCAAGAAAATTTGTTCACGGAGACATCAAACCGACAAACATCCTCCTAGACAACAATTTCCAACCTTATGTTTCCGATTTCGGCCTCAACAGACTAATCAGCATCACGGGAAACAACCTTTCCTCAGGCGGCTTTATAGGCGGAGCCCTCCCTTACTTTAATTCCGTTCCAACCGAGCGAACTAACAGTTACCGTGCTCCGGAAGCTAGAGTTCCAGGAAGCAGGCCGGCCCAAAAATGGGATGTGTATTCATTTGGGGTGGTTGTATTGGAATTGCTCACAGGAAAGTCGCCTGAGCTTTCCCCTAACACGTCAACTTCTGTGGAAGTTCCGGATATCGTGAGGTGGGTGAGGAAAGGATTTGAAGAAGAGAATCCACTTTCTGATATGGTGGAACCCATGTTGCTTCAAGAGGTTCATGCTAAGAAGGAAGTGCTTGCTGTTTTTCATGTGGCGCTTGCTTGTACTGAGGCAGATGCTGAGATTCGTCCTAGGATGAAAACTGTTTCTGACAACCTTGACAGGATTGGAACTTAG 2184 48.08 MMTMMIMRKKKNTFFIMLRLLFFFFFFFQFLITSFALTPDGLSLLSLKSAVDQPYDASVFSDWNEDDANPCHWTGISCMNVTTSSDPRVVGISIAGRNLRGYLPSELGSLFYLRRLNLHSNNFYGSLPTQLFNATALHSIFLYGNNLSGTLPPSICNIPRLQNLDLSNNSLSETIPKDIKNCKQLQRLNLAQNKFTGEIPDGVWSQMDNLVLLDLSANNFSGPIPEDISALKSLSGTLNLSHNHLTGQIPKSLGDLPVTVSFDLRNNNLTGEIPQTGSFVNQGPTAFLDNPLLCGFPLQKPCRNSEQSSPQSPNSTTAYNTAPKKGLSPGLIILISVADAAGVAFIGLVIVYIYWKKKDDTNACSCTGKGKFGGNEKTHTCSLCSFPCINGFRNDEEEGGMEDSEQAERGGGELVAIDKGFTFELDELLRASAYVLGKSGFGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFVTEVQAIGKVKHPNVVKLRAYYWAPDEKLLISDFISNGNLASALRGRSGQPSTNLSWSIRLKIVKGTARGLAYLHECSPRKFVHGDIKPTNILLDNNFQPYVSDFGLNRLISITGNNLSSGGFIGGALPYFNSVPTERTNSYRAPEARVPGSRPAQKWDVYSFGVVVLELLTGKSPELSPNTSTSVEVPDIVRWVRKGFEEENPLSDMVEPMLLQEVHAKKEVLAVFHVALACTEADAEIRPRMKTVSDNLDRIGT 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9007123 9012886 + Conep13aG0116900.1 Cone13ag1137 451524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1137 727 Gene3D Phosphorylase Kinase; domain 1 419 505 - -
Cone13ag1137 727 Pfam Leucine rich repeat 159 220 IPR001611 GO:0005515(InterPro)
Cone13ag1137 727 FunFam Leucine-rich repeat receptor-like protein kinase 209 304 - -
Cone13ag1137 727 SUPERFAMILY Protein kinase-like (PK-like) 435 720 IPR011009 -
Cone13ag1137 727 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 37 205 - -
Cone13ag1137 727 ProSiteProfiles Protein kinase domain profile. 430 702 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1137 727 Gene3D Transferase(Phosphotransferase) domain 1 506 727 - -
Cone13ag1137 727 Pfam Leucine Rich Repeat 137 157 IPR001611 GO:0005515(InterPro)
Cone13ag1137 727 Pfam Leucine Rich Repeat 237 256 IPR001611 GO:0005515(InterPro)
Cone13ag1137 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 553 565 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1137 727 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Cone13ag1137 727 Gene3D Ribonuclease Inhibitor 39 203 IPR032675 -
Cone13ag1137 727 CDD STKc_IRAK 436 725 - -
Cone13ag1137 727 FunFam Leucine-rich repeat receptor-like protein kinase 413 505 - -
Cone13ag1137 727 FunFam Os07g0541700 protein 516 592 - -
Cone13ag1137 727 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 183 725 IPR046959 -
Cone13ag1137 727 Pfam Protein kinase domain 435 654 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1137 727 SMART serkin_6 434 702 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1137 727 SUPERFAMILY L domain-like 39 299 - -
Cone13ag1137 727 Gene3D Ribonuclease Inhibitor 205 302 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0803 Cone-Chr13:7406610 Cone13ag1137 Cone-Chr13:9007123 2.78E-120 dispersed
Cone13ag1137 Cone-Chr13:9007123 Cone19ag0808 Cone-Chr19:6465061 4.89E-122 dispersed
Cone13ag1137 Cone-Chr13:9007123 Cone19ag1118 Cone-Chr19:8033697 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82044 PF01406 tRNA-synt_1e 2.20E-76 CL0039 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1137 - - - 0.0