Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1158 ATGTCCATATACCACTTCTCTTCAGACGTCTGGACTCAGCGCTACCACTATCCAACTACCGCGATGGAAGCTCAGCACTATTCCTCAAAACAAACCACCTCCGACCAACACTTCCACCATCGCCATCACCGCCCATCCGCCACGTTCCCTGTCAACCTCAACAGCCACGACGTCGACGAAGAAGATCAAGAAGAACTCGACGACCAATCAGAAGACGCACAACAACTACTATTCCTAAACCACTTAAAAGAACCCATGTTCGAGAAGCCATTAACGCCGAGTGACGTCGGAAAGCTGAACCGCCTCGTCATACCAAAACAACACGCCGAGAGATACTTCCCGCTCGCCGGTGGAAGTGGAGGCGGAGGGGGAGGTGAGTCCCCGAACGACAAGGGGTTTCTATTGAGTTTCGAGGACGAGTTGGGAAAGTGTTGGCGGTTCCGGTACTCGTACTGGAACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCGTTACGTGAAAGAGAAGCGCCTTGAAGCGGGCGACGTAGTTTTCTTCGAACGGCAACGTACGGAAGGTGACAGGTTATTCATAGGTTGTCGGCGGCGCTGCTTGCCTTCTGTTTCTACTGTTGCAGTAGGAGGGTCGGTGCATGATACCACGGCTAGTAGTAGTACCAGTGCAATAATATTATCGCAGAATAGTCATACCAATTATAGTACTAGTAGCGAAAATAGAGGGTGGACCAGGTGTATCTATTCTGCGCATCATCCTTATCCTGCGCACAGTCATCATCATCAAAATCACTATCCTATGTCATACCAAGCAGACTGTCTTCATGCACCAGGGTATCGAGGTCAAGAGGGACAAACAATGGGGGTAGGAAACTCAAAGATACTGAGGCTGTTTGGAGTGAACATGGAGTGCCAGGTAGATGAGCCGGTATCATCAGAGCCATCGACCCCAATCGGCTCGTCTTTATCAAGCCAGGGTTCGGTCCACCCGAGCCACTTCTATACTCACATGAACTATTCTTCAAATTCTCCTAATCACATGACTAATTAG 1050 49.81 MSIYHFSSDVWTQRYHYPTTAMEAQHYSSKQTTSDQHFHHRHHRPSATFPVNLNSHDVDEEDQEELDDQSEDAQQLLFLNHLKEPMFEKPLTPSDVGKLNRLVIPKQHAERYFPLAGGSGGGGGGESPNDKGFLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLEAGDVVFFERQRTEGDRLFIGCRRRCLPSVSTVAVGGSVHDTTASSSTSAIILSQNSHTNYSTSSENRGWTRCIYSAHHPYPAHSHHHQNHYPMSYQADCLHAPGYRGQEGQTMGVGNSKILRLFGVNMECQVDEPVSSEPSTPIGSSLSSQGSVHPSHFYTHMNYSSNSPNHMTN 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9115197 9117810 + Conep13aG0119000.1 Cone13ag1158 451545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1158 349 MobiDBLite consensus disorder prediction 26 69 - -
Cone13ag1158 349 SMART B3_2 87 198 IPR003340 GO:0003677(InterPro)
Cone13ag1158 349 SUPERFAMILY DNA-binding pseudobarrel domain 84 199 IPR015300 -
Cone13ag1158 349 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 302 IPR044800 GO:0003700(InterPro)
Cone13ag1158 349 MobiDBLite consensus disorder prediction 308 327 - -
Cone13ag1158 349 Gene3D - 81 200 IPR015300 -
Cone13ag1158 349 ProSiteProfiles B3 DNA-binding domain profile. 87 198 IPR003340 GO:0003677(InterPro)
Cone13ag1158 349 CDD B3_DNA 85 188 IPR003340 GO:0003677(InterPro)
Cone13ag1158 349 Pfam B3 DNA binding domain 87 197 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1158 Cone-Chr13:9115197 Cone14ag0476 Cone-Chr14:2312898 1.40E-43 dispersed
Cone13ag1158 Cone-Chr13:9115197 Cone19ag1137 Cone-Chr19:8128818 1.63E-188 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44662 PF00830 Ribosomal_L28 4.40E-20 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1158 K09287 - vvi:100245964 277.33