Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1190 ATGGCGGAAGAGCACAGATGCGAAGCTCCAGAGGCCCACCTCCTTTGCGCGAATAACTGCGGCTTTTTTGGCAGTCCAGCCACCATGAACCTCTGCTCCAAGTGTTACGGAGACTTTCGCCTTAAGGAGCAGCAAAAAGCCTCCACCAAATCCACCATCGAAGCTGCTCTCTCCGCTTCGTCACCGTCGCCGATTGAACCTCTCTCCGCTCCTCCTCCTCCCCTTCCTCTTCCACTTATCACGGAAGCTGAAGAATTGAGAAGTCCAGGTCTCATAGCTGATGCTTCGGGCCCAGCGGTGGTAGCGAACAAGACCAACCGGTGCACAGTATGCCGGAAACGTGTCGGACTGACCGGTTTTATGTGTAAATGCGGGATCACGTTCTGTGGGACTCACCGATATCCGGAGAAGCATGGATGTACGTTTGATTTCAAGACGGTTGGAAGAGATGAGATTGCTCGGGCTAATCCTCTCGTTAAAGCTGATAAGTTAGAGAAGATTTGA 504 52.38 MAEEHRCEAPEAHLLCANNCGFFGSPATMNLCSKCYGDFRLKEQQKASTKSTIEAALSASSPSPIEPLSAPPPPLPLPLITEAEELRSPGLIADASGPAVVANKTNRCTVCRKRVGLTGFMCKCGITFCGTHRYPEKHGCTFDFKTVGRDEIARANPLVKADKLEKI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9240133 9241526 - Conep13aG0122300.1 Cone13ag1190 451577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1190 167 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone13ag1190 167 FunFam Zinc finger AN1-type containing 6 83 163 - -
Cone13ag1190 167 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Cone13ag1190 167 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone13ag1190 167 Gene3D - 91 163 IPR035896 -
Cone13ag1190 167 SMART AN1_Zf_4 108 145 IPR000058 GO:0008270(InterPro)
Cone13ag1190 167 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone13ag1190 167 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 167 IPR050652 -
Cone13ag1190 167 Pfam AN1-like Zinc finger 108 144 IPR000058 GO:0008270(InterPro)
Cone13ag1190 167 SUPERFAMILY AN1-like Zinc finger 100 162 IPR035896 -
Cone13ag1190 167 Gene3D - 1 63 - -
Cone13ag1190 167 ProSiteProfiles Zinc finger AN1-type profile. 102 148 IPR000058 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1190 Cone-Chr13:9240133 Cone19ag0506 Cone-Chr19:4164342 1.91E-43 dispersed
Cone9ag0728 Cone-Chr9:3471824 Cone13ag1190 Cone-Chr13:9240133 2.19E-41 transposed
Cone10ag0164 Cone-Chr10:815531 Cone13ag1190 Cone-Chr13:9240133 3.07E-70 wgd
Cone11ag1378 Cone-Chr11:9999942 Cone13ag1190 Cone-Chr13:9240133 1.31E-20 wgd
Cone13ag1190 Cone-Chr13:9240133 Cone18ag0208 Cone-Chr18:1024337 1.61E-51 wgd
Cone13ag1190 Cone-Chr13:9240133 Cone19ag1173 Cone-Chr19:8258367 4.81E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1190 - - - 0.0